View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_44 (Length: 318)
Name: NF18153_low_44
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 7179468 - 7179760
Alignment:
| Q |
9 |
caataatattatcttcctctgcaaatttcatttacacaaattaaaacatacattgccaattaatgtttttaatttacatctcaattcgaaatgtttttaa |
108 |
Q |
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| T |
7179468 |
caataatattatcttcctctgcaaatttcatttacacaaattaaaacatacattgccaattaatgtttttaatttacatctcaattcgaaatgttttcaa |
7179567 |
T |
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| Q |
109 |
tttacgtgtcattgacacatgttannnnnnnnnaattgtattgtaaaatgttacaaacaatttttggtctttatcatttgattcttaggaattaagagcc |
208 |
Q |
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| T |
7179568 |
tttacgtgtcattgacacatgttattttattt-aattgtattgtaaaatgttacaaacaatttttggtctttatcatttgattcttaggaattaagagcc |
7179666 |
T |
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| Q |
209 |
atgataatctagagtttggagaataattacttttgttagaatttgaactcgtgttttctctaaagatttgtctaagtttattaaaccacttgaa |
302 |
Q |
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| T |
7179667 |
atgataatctagagtttggagaataactacttttgttagaatttgaactcgtgttttctctgaagatttgtctaagtttattaaaccagttgaa |
7179760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 7192637 - 7192685
Alignment:
| Q |
9 |
caataatattatcttcctctgcaaatttcatttacacaaattaaaacat |
57 |
Q |
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| T |
7192637 |
caatgatattatcttcctctacatattttatttacacaaattaaaacat |
7192685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 7192969 - 7193037
Alignment:
| Q |
234 |
attacttttgttagaatttgaactcgtgttttctctaaagatttgtctaagtttattaaaccacttgaa |
302 |
Q |
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| T |
7192969 |
attactttagttagtatttgaactttaattttttctaaagattcgtctaagcttattaaaccacttgaa |
7193037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 10658644 - 10658684
Alignment:
| Q |
65 |
caattaatgtttttaatttacatctcaattcgaaatgtttt |
105 |
Q |
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| T |
10658644 |
caattaatgtttttaatttacgtgtcaattcgaaatgtttt |
10658684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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