View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18153_low_45 (Length: 312)

Name: NF18153_low_45
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18153_low_45
NF18153_low_45
[»] chr7 (5 HSPs)
chr7 (24-237)||(47498167-47498380)
chr7 (249-294)||(47498103-47498148)
chr7 (250-297)||(12645298-12645345)
chr7 (250-297)||(36251731-36251778)
chr7 (253-294)||(6335595-6335636)
[»] chr5 (2 HSPs)
chr5 (250-296)||(13952285-13952331)
chr5 (250-294)||(1271181-1271225)
[»] chr6 (1 HSPs)
chr6 (249-297)||(11134805-11134853)
[»] chr2 (2 HSPs)
chr2 (250-294)||(38574973-38575017)
chr2 (250-297)||(22999156-22999203)
[»] chr8 (1 HSPs)
chr8 (250-297)||(24197828-24197875)
[»] chr4 (4 HSPs)
chr4 (250-297)||(32057724-32057771)
chr4 (249-297)||(37340107-37340155)
chr4 (253-297)||(38944384-38944428)
chr4 (250-298)||(41293061-41293109)
[»] chr3 (1 HSPs)
chr3 (249-297)||(22935770-22935818)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 24 - 237
Target Start/End: Complemental strand, 47498380 - 47498167
Alignment:
Q  24 tctacgtgacgaaaagggtaggatagttaaatattcttcgtgatgaaaggagtaggaatgtaggatagttaaatttctagtgtagtggtattgtcgtttt 123  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47498380 tctacgtgacgaaaagggtaggatagttaaatattctacgtgatgaaaggagtaggaatgtaggatagttaaatttctagggtagtggtattgtcgtttt 47498281  T
Q  124 ggatgttgagaaatagtgtaattttcacgagtttgaatttgtctcctctatatttagagtcaatttatgatggatctagacataagaggaagattagcaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47498280 ggatgttgagaaatagtgtaattttcacgagtttgaatttgtctcctctatatttagagtcaatttatgatagatctagacataagaggaagattagcaa 47498181  T
Q  224 gagttatcggtgaa 237  Q
    ||||||||||||||    
T  47498180 gagttatcggtgaa 47498167  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 294
Target Start/End: Complemental strand, 47498148 - 47498103
Alignment:
Q  249 ttagatagacgagatgacaaaactatcataaatttacacacataaa 294  Q
    |||||||||||||||||||||||||||||||||| |||||||||||    
T  47498148 ttagatagacgagatgacaaaactatcataaattcacacacataaa 47498103  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 12645298 - 12645345
Alignment:
Q  250 tagatagacgagatgacaaaactatcataaatttacacacataaagtg 297  Q
    |||||||||||||||||||||| ||||||||   ||||||||||||||    
T  12645298 tagatagacgagatgacaaaaccatcataaacccacacacataaagtg 12645345  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 36251778 - 36251731
Alignment:
Q  250 tagatagacgagatgacaaaactatcataaatttacacacataaagtg 297  Q
    ||||||||||||||| |||||| |||||||| | ||||||||||||||    
T  36251778 tagatagacgagatggcaaaaccatcataaactcacacacataaagtg 36251731  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 294
Target Start/End: Original strand, 6335595 - 6335636
Alignment:
Q  253 atagacgagatgacaaaactatcataaatttacacacataaa 294  Q
    ||||| |||||||||||||||||||||| | |||||||||||    
T  6335595 atagaagagatgacaaaactatcataaactcacacacataaa 6335636  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 13952285 - 13952331
Alignment:
Q  250 tagatagacgagatgacaaaactatcataaatttacacacataaagt 296  Q
    |||||||||||||||||||| |||||||||||||||| ||| |||||    
T  13952285 tagatagacgagatgacaaagctatcataaatttacatacacaaagt 13952331  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 294
Target Start/End: Complemental strand, 1271225 - 1271181
Alignment:
Q  250 tagatagacgagatgacaaaactatcataaatttacacacataaa 294  Q
    |||||||||||||||||||||| |||||||| | ||||| |||||    
T  1271225 tagatagacgagatgacaaaacaatcataaactcacacatataaa 1271181  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 11134805 - 11134853
Alignment:
Q  249 ttagatagacgagatgacaaaactatcataaatttacacacataaagtg 297  Q
    |||||||||||| ||||||||  ||||||||||||||||| ||||||||    
T  11134805 ttagatagacgaaatgacaaaggtatcataaatttacacatataaagtg 11134853  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 38574973 - 38575017
Alignment:
Q  250 tagatagacgagatgacaaaactatcataaatttacacacataaa 294  Q
    |||||||| |||||||||||||||||||||||| ||||| |||||    
T  38574973 tagatagatgagatgacaaaactatcataaattcacacatataaa 38575017  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 297
Target Start/End: Complemental strand, 22999203 - 22999156
Alignment:
Q  250 tagatagacgagatgacaaaactatcataaatttacacacataaagtg 297  Q
    |||||||||||||||||||||| |||||||| | ||||||| ||||||    
T  22999203 tagatagacgagatgacaaaaccatcataaactcacacacacaaagtg 22999156  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 24197828 - 24197875
Alignment:
Q  250 tagatagacgagatgacaaaactatcataaatttacacacataaagtg 297  Q
    |||||||| ||||||||||||| |||||||| | ||||||||||||||    
T  24197828 tagatagaagagatgacaaaaccatcataaactcacacacataaagtg 24197875  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 297
Target Start/End: Original strand, 32057724 - 32057771
Alignment:
Q  250 tagatagacgagatgacaaaactatcataaatttacacacataaagtg 297  Q
    |||||||||||||||||||||| |||||||| | ||||||| ||||||    
T  32057724 tagatagacgagatgacaaaaccatcataaactcacacacacaaagtg 32057771  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 37340107 - 37340155
Alignment:
Q  249 ttagatagacgagatgacaaaactatcataaatttacacacataaagtg 297  Q
    ||||||||||||||||||||||  |||||||| | ||||||| ||||||    
T  37340107 ttagatagacgagatgacaaaatcatcataaactcacacacacaaagtg 37340155  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 38944384 - 38944428
Alignment:
Q  253 atagacgagatgacaaaactatcataaatttacacacataaagtg 297  Q
    ||||||||||||||||||| |||||||| | ||| ||||||||||    
T  38944384 atagacgagatgacaaaaccatcataaactcacatacataaagtg 38944428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 41293061 - 41293109
Alignment:
Q  250 tagatagacgagatgacaaaactatcataaatttacacacataaagtga 298  Q
    |||||||| ||||||| ||| ||||||||||||  ||||||||||||||    
T  41293061 tagatagatgagatgataaagctatcataaattctcacacataaagtga 41293109  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 22935770 - 22935818
Alignment:
Q  249 ttagatagacgagatgacaaaactatcataaatttacacacataaagtg 297  Q
    |||||||| |||||||||||| |||||||||| | ||||| ||||||||    
T  22935770 ttagataggcgagatgacaaacctatcataaactcacacatataaagtg 22935818  T

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