View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18153_low_46 (Length: 302)

Name: NF18153_low_46
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18153_low_46
NF18153_low_46
[»] chr2 (18 HSPs)
chr2 (13-280)||(15013241-15013508)
chr2 (16-284)||(31969154-31969425)
chr2 (38-280)||(15003958-15004202)
chr2 (16-280)||(14520149-14520416)
chr2 (38-280)||(15007831-15008076)
chr2 (175-284)||(14533989-14534098)
chr2 (129-280)||(14552342-14552493)
chr2 (38-280)||(15023768-15024013)
chr2 (16-268)||(15019745-15020000)
chr2 (154-284)||(14512305-14512441)
chr2 (153-280)||(14850532-14850659)
chr2 (154-284)||(14528755-14528891)
chr2 (154-284)||(14542981-14543117)
chr2 (155-280)||(14547132-14547257)
chr2 (127-280)||(14567381-14567534)
chr2 (27-107)||(14534166-14534246)
chr2 (42-94)||(14547321-14547373)
chr2 (42-95)||(14850418-14850471)


Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 15013508 - 15013241
Alignment:
Q  13 aatatatagatttcctagttcgaatcaatctagcaatggcagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtgaagggg 112  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15013508 aatatatagatttcctagttcgaagcaatctagcaatggcagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtgaagggg 15013409  T
Q  113 agttataaacgaccttgaatgtcgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttg 212  Q
    |||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  15013408 agttataaacgaccttgaatttagaattaagtaaacaatagtatccttgttggttttcaaaaacctatttaataattgaaaaagagggattatccgtttg 15013309  T
Q  213 tccaagctactttgtaaaatgtgagggtttgtagttaacaatggaacaatatcagataaagaagcacc 280  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15013308 tccaagctactttgtaaaatgtgagggtttgcagttaacaatggaacaatatcagataaagaagcacc 15013241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 31969425 - 31969154
Alignment:
Q  16 atatagatttcctagttcgaatcaatctagcaatggcagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtgaaggggagt 115  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||      
T  31969425 atatagatttcctagttcgaagcaatctagcaatggcagaatcataaactccaaaatcaaccatcaaattgatattagcctctagaaggttaaggggata 31969326  T
Q  116 ta---taaacgaccttgaatgtcgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttg 212  Q
     |   |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  31969325 aacaataaacgaccttgaatgtcgaattaagtaaacaatagtatccttgttggttttcgaaaacctatttaacaattgaaaaagagggattattcgtttg 31969226  T
Q  213 tccaagctactttgtaaaatgtgagggtttgtagttaacaatggaacaatatcagataaagaagcaccattg 284  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31969225 tccaagctactttgtaaaatgtgagggtttgcagttaacaatggaacaatatcagataaagaagcaccattg 31969154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 38 - 280
Target Start/End: Original strand, 15003958 - 15004202
Alignment:
Q  38 caatctagcaatggcagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtgaaggggagtta---taaacgaccttgaatgt 134  Q
    |||||||||||||| ||||||| ||||  ||||||| |||||||||||||||||||||||||||| ||||  ||||   |   ||||||| ||||||| |    
T  15003958 caatctagcaatggtagaatcagaaacatcaaaatccaccatcaaattgatattagcctctagaaagtgatagggataaaaagtaaacgatcttgaatat 15004057  T
Q  135 cgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttgtaaaatgt 234  Q
    ||||||| |  |||||| |||||||||||||||| ||||||||||||||| |||| ||||||||| |||||||| || ||||||||||||||||||||      
T  15004058 cgaattaagccaacaatggtatccttgttggttt-cgaaaacctatttaacaattcaaaaagagggattattcgattctccaagctactttgtaaaattc 15004156  T
Q  235 gagggtttgtagttaacaatggaacaatatcagataaagaagcacc 280  Q
    ||||||||| ||||||||||| ||||||||||||  ||||||||||    
T  15004157 gagggtttgaagttaacaatgaaacaatatcagaggaagaagcacc 15004202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 14520416 - 14520149
Alignment:
Q  16 atatagatttcctagttcgaatcaatctagcaatggcagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtgaaggggag- 114  Q
    ||||||||  ||| ||| ||| |||||||||||||  ||||||| |||||||||| |||| ||||||||||||||||||||||||||  |||  ||||      
T  14520416 atatagatgaccttgtttgaagcaatctagcaatgttagaatcagaaactccaaattcaatcatcaaattgatattagcctctagaacatgatagggata 14520317  T
Q  115 --ttataaacgaccttgaatgtcgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttg 212  Q
      | ||||||||   ||||| |||||||| | ||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||     
T  14520316 aataataaacgatagtgaatttcgaattaagcaaacaatggtatccttgttggttttcgaaaacctatttaacaattgaaaaagagggattattcgtttc 14520217  T
Q  213 tccaagctactttgtaaaatgtgagggtttgtagttaacaatggaacaatatcagataaagaagcacc 280  Q
    ||||| |||||||||||||| | ||| |||| ||||||||   ||| |||||||||  ||||||||||    
T  14520216 tccaaactactttgtaaaattttaggatttgcagttaacaggcgaataatatcagaggaagaagcacc 14520149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 38 - 280
Target Start/End: Complemental strand, 15008076 - 15007831
Alignment:
Q  38 caatctagcaatggcagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtga-agggg--agttataaacgaccttgaatgt 134  Q
    |||| ||||||||| ||||||| ||||||||||| ||   |||||||||||||||||| | | ||||||| | |||  | | ||||||||| ||||||||    
T  15008076 caatttagcaatggtagaatcagaaactccaaaaccagttatcaaattgatattagccacaataaggtgatatgggctaataataaacgacattgaatgt 15007977  T
Q  135 cgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttgtaaaatgt 234  Q
    |||| || | |||||||  ||||||||||||||||  | |||||| |||| |||| ||||||||| |||||||||||| ||||||||||| |||||||      
T  15007976 cgaagtaagcaaacaatgatatccttgttggttttaaagaacctacttaacaattcaaaaagagggattattcgtttgcccaagctacttcgtaaaattg 15007877  T
Q  235 gagggtttgtagttaacaatggaacaatatcagataaagaagcacc 280  Q
     |||||||| ||||||||||| ||||||||||| | ||||||||||    
T  15007876 tagggtttgcagttaacaatgaaacaatatcagctgaagaagcacc 15007831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 175 - 284
Target Start/End: Complemental strand, 14534098 - 14533989
Alignment:
Q  175 acctatttaataattgaaaaagaggaattattcgtttgtccaagctactttgtaaaatgtgagggtttgtagttaacaatggaacaatatcagataaaga 274  Q
    ||||| ||||||||||||||||||| |||||| |||| |||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  14534098 acctacttaataattgaaaaagagggattatttgtttctccaagctacttcgtaaaattcgagggtttgtagttaacaatggaacaatatcagataaaga 14533999  T
Q  275 agcaccattg 284  Q
    ||||||||||    
T  14533998 agcaccattg 14533989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 129 - 280
Target Start/End: Complemental strand, 14552493 - 14552342
Alignment:
Q  129 gaatgtcgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttgta 228  Q
    ||||||||||||| | ||||||| ||||||||||| |||||  | ||| |  |||| |||| ||||||||| |||||||||||||||| |||||||||||    
T  14552493 gaatgtcgaattaagcaaacaattgtatccttgttagttttaaagaacattcttaacaattcaaaaagagggattattcgtttgtccaggctactttgta 14552394  T
Q  229 aaatgtgagggtttgtagttaacaatggaacaatatcagataaagaagcacc 280  Q
    |||| |||||||||| ||||||||||| || ||||| |||| ||||||||||    
T  14552393 aaatttgagggtttgaagttaacaatgaaataatatgagatgaagaagcacc 14552342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 280
Target Start/End: Complemental strand, 15024013 - 15023768
Alignment:
Q  38 caatctagcaatggcagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtgaaggggag---ttataaacgaccttgaatgt 134  Q
    ||||||||||||| |||||||| ||||||||||||||   |||| ||||||| ||||| | | ||||||| |||||    |  ||| | |  | ||||||    
T  15024013 caatctagcaatgacagaatcagaaactccaaaatcagaaatcagattgatactagccacaataaggtgatggggatgactagtaacccatttcgaatgt 15023914  T
Q  135 cgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttgtaaaatgt 234  Q
     |||||| | ||||||||||||||||||| |||||  | |||||  |||  |||| ||||||||| |||||||| || || |||||| |||||||||| |    
T  15023913 tgaattaagcaaacaatagtatccttgttagttttaaagaaccttgttagcaatttaaaaagagggattattcgattctcaaagctagtttgtaaaattt 15023814  T
Q  235 gagggtttgtagttaacaatggaacaatatcagataaagaagcacc 280  Q
    |||||| |||||||||||||| |||||||| |||| ||||||||||    
T  15023813 gagggtatgtagttaacaatgaaacaatatgagatgaagaagcacc 15023768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 268
Target Start/End: Complemental strand, 15020000 - 15019745
Alignment:
Q  16 atatagatttcctagttcgaatcaatctagcaatggcagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtgaaggggagt 115  Q
    ||||||||  ||| ||||||| |||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| | | | | ||| | ||||| |    
T  15020000 atatagatggccttgttcgaagcaatctagcaatggtagaatcagaaaatccaaaatcaaccatcaaattgatattagacacaatacggtcatggggatt 15019901  T
Q  116 tata---aacgaccttgaatgtcgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttg 212  Q
      ||   || |   |  ||| |||||||| | |||||||  ||||||||||||||||| |  ||||| ||||||||| ||||| ||| ||||||||| |     
T  15019900 agtagaaaatgcagtccaatatcgaattaagcaaacaatgatatccttgttggttttcaagtacctacttaataattcaaaaaaagggattattcgtctc 15019801  T
Q  213 tccaagctactttgtaaaatgtgagggtttgtagttaacaatggaacaatatcaga 268  Q
    |||||||||| |||||||||   ||||| || |||||||||||||| |||||||||    
T  15019800 tccaagctaccttgtaaaattctagggtgtgcagttaacaatggaataatatcaga 15019745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 154 - 284
Target Start/End: Complemental strand, 14512441 - 14512305
Alignment:
Q  154 tatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgttt------gtccaagctactttgtaaaatgtgagggtttgtagt 247  Q
    ||||||||||||||||| | |||||| ||||||||| ||||||||| |||||| ||||      ||||||||||||| |||||||   ||||||||||||    
T  14512441 tatccttgttggttttcaagaacctacttaataattcaaaaagagggattatttgtttctccaagtccaagctacttcgtaaaattctagggtttgtagt 14512342  T
Q  248 taacaatggaacaatatcagataaagaagcaccattg 284  Q
    |||||||||||||||||||||  |||||||| |||||    
T  14512341 taacaatggaacaatatcagaggaagaagcagcattg 14512305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 153 - 280
Target Start/End: Original strand, 14850532 - 14850659
Alignment:
Q  153 gtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttgtaaaatgtgagggtttgtagttaaca 252  Q
    ||||||||| ||| |||| | |||||| ||||||||| ||||||||| |||||||||||||| ||||||  ||||||||| |||||||||| ||||||||    
T  14850532 gtatccttgctggatttcaagaacctacttaataattcaaaaagagggattattcgtttgtctaagctatattgtaaaatttgagggtttgaagttaaca 14850631  T
Q  253 atggaacaatatcagataaagaagcacc 280  Q
    ||| || ||||| |||  ||||||||||    
T  14850632 atgaaataatatgagaggaagaagcacc 14850659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 284
Target Start/End: Complemental strand, 14528891 - 14528755
Alignment:
Q  154 tatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaag------ctactttgtaaaatgtgagggtttgtagt 247  Q
    ||||||||||||||||| | |||||| ||||||||| ||||||||| |||||| |||| ||||||      |||||| |||||||   ||||||||||||    
T  14528891 tatccttgttggttttcaagaacctacttaataattcaaaaagagggattatttgtttctccaagtccaggctacttcgtaaaattctagggtttgtagt 14528792  T
Q  248 taacaatggaacaatatcagataaagaagcaccattg 284  Q
    |||||||||||||||||||||  |||||||| |||||    
T  14528791 taacaatggaacaatatcagaggaagaagcagcattg 14528755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 284
Target Start/End: Complemental strand, 14543117 - 14542981
Alignment:
Q  154 tatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaag------ctactttgtaaaatgtgagggtttgtagt 247  Q
    ||||||||||||||||| | |||||| ||||||||| ||||||||| |||||| |||| ||||||      |||||| |||||||   ||||||||||||    
T  14543117 tatccttgttggttttcaagaacctacttaataattcaaaaagagggattatttgtttctccaagtccaggctacttcgtaaaattctagggtttgtagt 14543018  T
Q  248 taacaatggaacaatatcagataaagaagcaccattg 284  Q
    |||||||||||||||||||||  |||||||| |||||    
T  14543017 taacaatggaacaatatcagaggaagaagcagcattg 14542981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 280
Target Start/End: Complemental strand, 14547257 - 14547132
Alignment:
Q  155 atccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttgtaaaatgtgagggtttgtagttaacaat 254  Q
    |||||||||||||||| | || ||| |||| |||||||||||||| || |||||||| |||||||||||| | |||||  ||||||||   ||||  |||    
T  14547257 atccttgttggttttcaagaagctacttaacaattgaaaaagagggataattcgtttctccaagctacttcgcaaaattcgagggttttctgttatgaat 14547158  T
Q  255 ggaacaatatcagataaagaagcacc 280  Q
    | ||||||||||||| ||| ||||||    
T  14547157 gaaacaatatcagatgaagtagcacc 14547132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 280
Target Start/End: Complemental strand, 14567534 - 14567381
Alignment:
Q  127 ttgaatgtcgaattatgtaaacaatagtatccttgttggttttcgaaaacctatttaataattgaaaaagaggaattattcgtttgtccaagctactttg 226  Q
    ||||||| ||||||| | ||| |||  |||| |||||||||||| | ||| || |||| |||| ||||||||| ||||||||||| ||||| ||| | ||    
T  14567534 ttgaatgccgaattaagcaaataatgatatctttgttggttttcaagaacttacttaacaattcaaaaagagggattattcgtttctccaaactaatatg 14567435  T
Q  227 taaaatgtgagggtttgtagttaacaatggaacaatatcagataaagaagcacc 280  Q
     |||||   |||||||| ||||||||||| |||||| |||||  ||||||||||    
T  14567434 caaaattatagggtttgaagttaacaatgaaacaatctcagaggaagaagcacc 14567381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 14534246 - 14534166
Alignment:
Q  27 ctagttcgaatcaatctagcaatggcagaatcacaaactccaaaatcaaccatcaaattgatattagcctctagaaggtga 107  Q
    |||| ||||||||||||||||||| |||||| |  || ||||||||||  ||||||||||||||||||| | | |||||||    
T  14534246 ctagatcgaatcaatctagcaatgacagaatgaggaattccaaaatcagtcatcaaattgatattagccacaataaggtga 14534166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 14547373 - 14547321
Alignment:
Q  42 ctagcaatggcagaatcacaaactccaaaatcaaccatcaaattgatattagc 94  Q
    ||||||||| |||||||| ||||||||||||||  ||||||||||||||||||    
T  14547373 ctagcaatgacagaatcagaaactccaaaatcagtcatcaaattgatattagc 14547321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 14850418 - 14850471
Alignment:
Q  42 ctagcaatggcagaatcacaaactccaaaatcaaccatcaaattgatattagcc 95  Q
    ||||||||| ||  |||| ||||||||||||||  |||||||||||||||||||    
T  14850418 ctagcaatgacattatcagaaactccaaaatcagtcatcaaattgatattagcc 14850471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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