View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_49 (Length: 286)
Name: NF18153_low_49
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_49 |
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| [»] scaffold0158 (1 HSPs) |
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| [»] scaffold0060 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 55 - 170
Target Start/End: Original strand, 20808729 - 20808844
Alignment:
| Q |
55 |
cgaatgcaattttagttgtgaagtttaaagagtttaaacacgatgtttcgaaaagtaaataaaagaatgttgccatacaagttaagaattcgtcagtcac |
154 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
20808729 |
cgaatgcaattttagttgtgaagtttaaagagtttaaacacgatgtttcataaagtaaataaaagaatgttgccatacaagttaagaattcatcagtgac |
20808828 |
T |
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| Q |
155 |
ctatggcatgggacta |
170 |
Q |
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|||||||||||||||| |
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| T |
20808829 |
ctatggcatgggacta |
20808844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 20808946 - 20809026
Alignment:
| Q |
187 |
gagaaaatccatgactataaatatacgttatatattgagccatcagttgtactaccttatgtattgcgtactcgtcagtca |
267 |
Q |
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| T |
20808946 |
gagaaaatccatgactataaatatacgtcatatattgagccatcaattgtactatcttatgtgttgcatactcgtcagtca |
20809026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 6286544 - 6286613
Alignment:
| Q |
197 |
atgactataaatatacgttatatattgagccatcagttgtactaccttatgtattgcgtactcgtcagtc |
266 |
Q |
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| T |
6286544 |
atgactatagatatacgttatgtattaagccatcagttgtactaccttgtctattgtatactcgttagtc |
6286613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 55 - 170
Target Start/End: Original strand, 11876 - 11991
Alignment:
| Q |
55 |
cgaatgcaattttagttgtgaagtttaaagagtttaaacacgatgtttcgaaaagtaaataaaagaatgttgccatacaagttaagaattcgtcagtcac |
154 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| || |
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| T |
11876 |
cgaatggaattttagttgtgaagtttaaagagtttaaacacaatgtttcagaaagtaaataaaagaatgttgccatataagttaagaattcatcagtgac |
11975 |
T |
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| Q |
155 |
ctatggcatgggacta |
170 |
Q |
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|||||||||||||||| |
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| T |
11976 |
ctatggcatgggacta |
11991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 36849 - 36950
Alignment:
| Q |
1 |
cagtaacaagtatatgaatgggaaaacactactcagaacatgaatgcggttactcgaatgcaattttagttgtgaagtttaaagagtttaaacacgatgt |
100 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36849 |
cagtaacaagtatctgaatggaaaaacactactcagaacatgaatgtggttactcaaatgcaactttagttgtgaagtttaaagagtttaaacacgatgt |
36948 |
T |
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| Q |
101 |
tt |
102 |
Q |
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|| |
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|
| T |
36949 |
tt |
36950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 172 - 267
Target Start/End: Original strand, 37934 - 38028
Alignment:
| Q |
172 |
aaaggataagttcatgagaaaatccatgactataaatatacgttatatattgagccatcagttgtactaccttatgtattgcgtactcgtcagtca |
267 |
Q |
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||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
37934 |
aaaggataa-ttcaggagaaaatccatgactataaatacacgttatatattgagccatcagttgtactaccttatgtattgcatactcgtcagtca |
38028 |
T |
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