View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18153_low_5 (Length: 711)

Name: NF18153_low_5
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18153_low_5
NF18153_low_5
[»] chr3 (16 HSPs)
chr3 (1-697)||(26452029-26452723)
chr3 (1-110)||(36755942-36756051)
chr3 (1-110)||(54099248-54099357)
chr3 (1-110)||(29780968-29781077)
chr3 (1-110)||(44813346-44813448)
chr3 (1-108)||(45186445-45186552)
chr3 (1-110)||(33796337-33796446)
chr3 (48-108)||(52100378-52100438)
chr3 (1-108)||(48944604-48944711)
chr3 (1-108)||(52485543-52485650)
chr3 (1-72)||(52714804-52714875)
chr3 (1-110)||(1436887-1436996)
chr3 (1-110)||(51698929-51699038)
chr3 (1-108)||(16479703-16479810)
chr3 (1-108)||(37894135-37894242)
chr3 (1-72)||(48353067-48353138)
[»] chr2 (9 HSPs)
chr2 (1-110)||(12070918-12071027)
chr2 (1-108)||(14328452-14328559)
chr2 (1-110)||(19843555-19843664)
chr2 (1-110)||(7084606-7084715)
chr2 (1-106)||(4657372-4657477)
chr2 (48-107)||(39309527-39309586)
chr2 (38-110)||(21738509-21738581)
chr2 (1-108)||(1040584-1040691)
chr2 (1-108)||(40700266-40700373)
[»] chr8 (9 HSPs)
chr8 (1-112)||(45405602-45405713)
chr8 (24-110)||(39453208-39453294)
chr8 (1-110)||(35067231-35067340)
chr8 (1-110)||(6440152-6440261)
chr8 (1-110)||(41639689-41639800)
chr8 (1-110)||(3413084-3413193)
chr8 (1-61)||(10902775-10902835)
chr8 (8-110)||(42786549-42786651)
chr8 (1-110)||(5574326-5574435)
[»] chr7 (9 HSPs)
chr7 (1-112)||(34507095-34507206)
chr7 (1-110)||(41430043-41430152)
chr7 (1-110)||(42584873-42584982)
chr7 (1-110)||(36352475-36352585)
chr7 (11-110)||(34108748-34108849)
chr7 (1-110)||(35822866-35822975)
chr7 (1-72)||(40854584-40854655)
chr7 (42-105)||(44496699-44496762)
chr7 (12-61)||(30064520-30064569)
[»] chr4 (11 HSPs)
chr4 (1-110)||(15522425-15522534)
chr4 (1-110)||(31468880-31468989)
chr4 (1-110)||(16019547-16019656)
chr4 (1-110)||(34757800-34757909)
chr4 (1-110)||(34759074-34759183)
chr4 (1-89)||(31574852-31574940)
chr4 (1-108)||(193603-193710)
chr4 (1-108)||(11546794-11546901)
chr4 (1-61)||(37997324-37997384)
chr4 (1-108)||(55609058-55609165)
chr4 (48-110)||(47015123-47015185)
[»] chr1 (11 HSPs)
chr1 (3-112)||(29877370-29877479)
chr1 (1-110)||(30519516-30519625)
chr1 (1-110)||(52437565-52437674)
chr1 (1-110)||(34817936-34818045)
chr1 (1-110)||(29359814-29359923)
chr1 (2-110)||(30745058-30745166)
chr1 (2-110)||(30766509-30766617)
chr1 (1-86)||(49570067-49570152)
chr1 (1-72)||(23665655-23665726)
chr1 (1-108)||(30973623-30973730)
chr1 (48-110)||(49446685-49446747)
[»] chr5 (8 HSPs)
chr5 (1-110)||(6758681-6758791)
chr5 (1-110)||(16690570-16690679)
chr5 (3-106)||(14321850-14321953)
chr5 (1-110)||(884512-884621)
chr5 (12-110)||(9168059-9168156)
chr5 (1-62)||(41699524-41699585)
chr5 (1-108)||(22098326-22098433)
chr5 (2-110)||(38493696-38493805)
[»] chr6 (4 HSPs)
chr6 (23-108)||(27612967-27613052)
chr6 (1-61)||(22079504-22079564)
chr6 (1-108)||(31869138-31869245)
chr6 (42-108)||(33651132-33651198)
[»] scaffold0662 (1 HSPs)
scaffold0662 (48-110)||(1262-1324)


Alignment Details
Target: chr3 (Bit Score: 633; Significance: 0; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 1 - 697
Target Start/End: Complemental strand, 26452723 - 26452029
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26452723 tttttactttctctctctattgctttgatttccctgtcaatacatgattttctttgtaaaaagatgattgtccatataattgtcaatcacattgatattc 26452624  T
Q  101 aaataacatttcgggtcacaaaagcaaatctcaaataatgctctaacatcaagttgaagcaatattttattttatggcataaagtattannnnnnnnnct 200  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||    
T  26452623 aaataacatttcagatcacaaaagcaaatctcaaataatgctctaacatcaagttgaagcaatattttattttatggcataaagtattatttttta--ct 26452526  T
Q  201 gacaaattatagcataagttgaagcaaagattatatataatatgattacatcatttgtctaacttgtaatataatattacatgagaatgtcgtggggaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452525 gacaaattatagcataagttgaagcaaagattatatataatatgattacatcatttgtctaacttgtaatataatattacatgagaatgtcgtggggaaa 26452426  T
Q  301 taatccgaattatatattattatacacatactcattataacaaccactagaattggtccttttgacattacaactatacaaatttatacaagcaccaaca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26452425 taatccgaattatatattattatacacatactcattataacaaccactagaattggtccttttgacattaaaactatacaaatttatacaagcaccaaca 26452326  T
Q  401 aaatcgatgctctagttacaatacacaactaagcctctaaaaccaaaggtttgaaaaattggcaggttttttacaagaacttttcttagatcattttcac 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  26452325 aaatcgatgctctagttacaatacacaactaagcctctaaaaccaaaggtttgaaaaattggcaggttttttacaagtacttttcttagatcattttcac 26452226  T
Q  501 aacccaaagcttatattttctaacatacaaatacacaagacaaggtcctataagatttgcttcagacagtgacttacaaagcttgatataaagatctaaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26452225 aacccaaagcttatattttctaacatacaaatacacaagacaaggtcctataagatttgcttcagacagtgacttacaaagcttgatataaagatctaaa 26452126  T
Q  601 tttccatattgctgtatccttttccttaaaccttgcataacagcaactctatccaaatactcaggatagaatcccaattcaagcattttcatcacag 697  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26452125 tttccatattgctgtatccttttccttaaaccttgcataacagcaactctatccaaatactcaggatagaatcccaattcaagcattttcattacag 26452029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 36756051 - 36755942
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||| ||||||||||| ||||||||||||   || ||||| ||  ||||||||||||||| ||| ||||| || ||||||||||||| ||||||||||    
T  36756051 tttttattttctctctctattgctttgatttttgtgccaacatatacttttctttgtaaaaatatggttgtcaatgtgattgtcaatcaaattgatattc 36755952  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  36755951 aaataacatt 36755942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 54099357 - 54099248
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||||||| ||||||||||||   || ||||| ||  ||||||||||||||| ||||||||| || | |||||||| || |||||| |||    
T  54099357 tttttactttctctctctattgctttgatttttatgccaacatatacttttctttgtaaaaatatgattgtcaatgtaattgtcaaccaaattgatgttc 54099258  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  54099257 aaataacatt 54099248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 29780968 - 29781077
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||| | ||||| ||| |||||||| | || ||| |||   |||||||| |||||| |||||||||||||||||||||||||| |||||| | |    
T  29780968 tttttactttttttctctattgttttgattttcgtgccaatacaaacttttctttataaaaatatgattgtccatatgattgtcaatcaaattgatgtcc 29781067  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  29781068 aaataacatt 29781077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 44813448 - 44813346
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||| ||||||| |||||||| ||| | |||||| ||||| ||||||||||||||       ||||||  || ||||||||||||||||| |||    
T  44813448 tttttactttatctctctattgctttggttttcgtgtcaatacatggttttctttgtaaaa-------tgtccacgtggttgtcaatcacattgatgttc 44813356  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  44813355 aaataacatt 44813346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 45186552 - 45186445
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||||||| || ||||||||| | |||||| ||||  ||||| ||||||||  ||| |||||||| || ||||||| || |||||| |||    
T  45186552 tttttactttctctctctattactttgattttcttgtcaatacatacttttcgttgtaaaagtatggttgtccatttggttgtcaaacaaattgatgttc 45186453  T
Q  101 aaataaca 108  Q
     |||||||    
T  45186452 gaataaca 45186445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 33796337 - 33796446
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||| |||| || || |||||||||   || ||||||||  |||||||| |||||| ||| ||||| || |||||||||| || |||||| |||    
T  33796337 tttttactttttctccctattactttgatttttgtgccaacacatacttttctttataaaaatatggttgtcaatgtgattgtcaaccaaattgattttc 33796436  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  33796437 aaataacatt 33796446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 52100378 - 52100438
Alignment:
Q  48 ttttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaaataaca 108  Q
    ||||||||||||||| |||||||||||| | |||||||| || |||||| |||||||||||    
T  52100378 ttttctttgtaaaaatatgattgtccatttaattgtcaagcaaattgatgttcaaataaca 52100438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 48944711 - 48944604
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||||||| || ||||||| |   || ||| ||||  ||||||||||||||| |||||||| ||| |  ||||||| || |||||| |||    
T  48944711 tttttactttctctctctattactttgatatttgtgccaatacatatttttctttgtaaaaatatgattgttcatttagttgtcaagcaaattgatgttc 48944612  T
Q  101 aaataaca 108  Q
    ||||||||    
T  48944611 aaataaca 48944604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 52485543 - 52485650
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||| ||||||| |||||||| ||| | || ||| ||||  ||||||||||||||| ||| ||||||||  | ||||||| || || ||| |||    
T  52485543 tttttactttatctctctattgctttggttttcgtgccaatacatacttttctttgtaaaaatatggttgtccattaggttgtcaaacaaatagatgttc 52485642  T
Q  101 aaataaca 108  Q
    ||||||||    
T  52485643 aaataaca 52485650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 52714804 - 52714875
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtc 72  Q
    |||||||||||||||||| ||||||||||||   || ||||||||  ||||||||||||||| ||| |||||    
T  52714804 tttttactttctctctctattgctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtc 52714875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 1436887 - 1436996
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||||||| ||| |||  |||   || ||||||||  ||||||||||||||| ||| ||||| || || |||| || || |||||| |||    
T  1436887 tttttactttctctctctattgttttattttttgtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtaaaccaaattgatgttc 1436986  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  1436987 aaataacatt 1436996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 51698929 - 51699038
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||| ||||||||||| ||| |||| |||   || ||||||||  |||||||||||| || ||| ||||| || || ||||||| || |||||| |||    
T  51698929 tttttattttctctctctattgatttggtttttgtgccaacacatacttttctttgtaagaatatggttgtcaatgtggttgtcaaccaaattgatgttc 51699028  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  51699029 aaataacatt 51699038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 16479703 - 16479810
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||| ||||||||||| || ||||||||| | || ||| ||||  ||||||||||||||| | | ||||| || || ||||||| || || ||| |||    
T  16479703 tttttattttctctctctattactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctatttggttgtcaagcaaatagatgttc 16479802  T
Q  101 aaataaca 108  Q
    ||||||||    
T  16479803 aaataaca 16479810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 37894242 - 37894135
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||||||| || ||||||| |   |||||| ||||  ||||||| |||||||  || |||||||| |  ||||||| || |||||| |||    
T  37894242 tttttactttctctctctattactttgatatttgtgtcaatacatacttttcttggtaaaaatgtggttgtccatttagttgtcaagcaaattgatgttc 37894143  T
Q  101 aaataaca 108  Q
    ||||||||    
T  37894142 aaataaca 37894135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 48353067 - 48353138
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtc 72  Q
    |||||||||||||||||| ||||||||||||   |  ||||||||  |||||||| |||||| |||||||||    
T  48353067 tttttactttctctctctattgctttgatttttgtaccaacacatacttttctttataaaaatatgattgtc 48353138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 12070918 - 12071027
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||| ||| |||||||||||| | |||||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||    
T  12070918 tttttactttctctttctattgctttgattttcgtgtcaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttc 12071017  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  12071018 aaataacatt 12071027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 14328452 - 14328559
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    ||||||||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||| || ||||||||| || |||||||||||| |||| |||    
T  14328452 tttttactttctctctctgttgctttgattttcgtgtcaatacatgattttcttagtaaaaatataattgtccatgtggttgtcaatcacaatgatgttc 14328551  T
Q  101 aaataaca 108  Q
    ||||||||    
T  14328552 aaataaca 14328559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 19843555 - 19843664
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    ||||| |||||||||||| ||||||||||||   || ||||||||  ||||||||||||||| || |||||| ||||||||||||| || |||||| |||    
T  19843555 tttttcctttctctctctattgctttgatttttgtgccaacacatacttttctttgtaaaaatataattgtcaatatgattgtcaaccaaattgatgttc 19843654  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  19843655 aaataacatt 19843664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 7084715 - 7084606
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||| ||| ||||||||||||   |  ||||||||  ||||||||||||||| ||||||||| || || ||||||| || |||||| |||    
T  7084715 tttttactttctctttctattgctttgatttttgtaccaacacatacttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaattgatgttc 7084616  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  7084615 aaataacatt 7084606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 4657372 - 4657477
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||||||| || ||||||| |   || ||| |||  ||||||||||||||||  ||||||||||| || ||||||| || |||||| |||    
T  4657372 tttttactttctctctctattactttgatatttatgccaatacacaattttctttgtaaaaatgtgattgtccatttggttgtcaagcaaattgatgttc 4657471  T
Q  101 aaataa 106  Q
    ||||||    
T  4657472 aaataa 4657477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 39309527 - 39309586
Alignment:
Q  48 ttttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaaataac 107  Q
    ||||||||||||||| |||||| || ||||||||||||| || |||||| ||||||||||    
T  39309527 ttttctttgtaaaaatatgattatcaatatgattgtcaaccaaattgattttcaaataac 39309586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 21738581 - 21738509
Alignment:
Q  38 caacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaaataacatt 110  Q
    ||||||||  ||||||||||||||| ||||||||| || |  ||||||| || |||||| |||||||||||||    
T  21738581 caacacatatttttctttgtaaaaatatgattgtcaatgtcgttgtcaaccaaattgatgttcaaataacatt 21738509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 1040584 - 1040691
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||| ||||||| ||| || |||||||||   || ||| ||||  |||||||||||||||  |||||||| || |||||||||| || || ||| |||    
T  1040584 tttttattttctctttctattactttgatttttgtgccaatacatacttttctttgtaaaaacgtgattgtctatttgattgtcaagcaaatagatgttc 1040683  T
Q  101 aaataaca 108  Q
    ||||||||    
T  1040684 aaataaca 1040691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 40700266 - 40700373
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||| ||||||| || ||||||||| | |||||| | ||  |||| ||| |||||| ||||||||| || || ||||||| || || ||| |||    
T  40700266 tttttactttatctctctattactttgattttcgtgtcaatatatatttttttttataaaaacatgattgtctatttggttgtcaagcaaatagatgttc 40700365  T
Q  101 aaataaca 108  Q
    ||||||||    
T  40700366 aaataaca 40700373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 5e-30; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 45405602 - 45405713
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||||||| |||||||||||| | |||||| | ||||||||||||||||||| ||  |||||||| || ||||||||||||||||| |||    
T  45405602 tttttactttctctctctattgctttgattttcgtgtcaatatatgattttctttgtaaaaatatagttgtccatgtggttgtcaatcacattgatgttc 45405701  T
Q  101 aaataacatttc 112  Q
    ||||||||||||    
T  45405702 aaataacatttc 45405713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 39453294 - 39453208
Alignment:
Q  24 tttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaaataacatt 110  Q
    ||||||||  ||||||| |||| |||||||||||||||| ||||||||| || || |||||||||| |||||| |||||||||||||    
T  39453294 tttgatttttctgtcaatacataattttctttgtaaaaatatgattgtcaatgtggttgtcaatcaaattgatgttcaaataacatt 39453208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 35067231 - 35067340
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||||||| |||||||| |||   || ||||||||  ||||||||||||||| ||| ||||| || || ||||||| || |||||| |||    
T  35067231 tttttactttctctctctattgctttggtttttgtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtcaaccaaattgatgttc 35067330  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  35067331 aaataacatt 35067340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 6440152 - 6440261
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||||| | ||||||||||||   |||||| ||||  ||||||||||||||| ||| ||||| || || ||||||| ||  ||||| |||    
T  6440152 tttttactttctctctttcttgctttgatttttgtgtcaatacatacttttctttgtaaaaatatggttgtcaatttggttgtcaaccaagttgatgttc 6440251  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  6440252 aaataacatt 6440261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 41639800 - 41639689
Alignment:
Q  1 tttttactttctct--ctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatat 98  Q
    ||||||||||||||  |||| ||||||||||||   |||||||||||  ||||||||||||||| ||| ||||| |  || ||||||| || |||||| |    
T  41639800 tttttactttctctctctctattgctttgatttttgtgtcaacacatacttttctttgtaaaaatatggttgtcaacgtggttgtcaaccaaattgatgt 41639701  T
Q  99 tcaaataacatt 110  Q
    ||||||||||||    
T  41639700 tcaaataacatt 41639689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 3413193 - 3413084
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||| | ||| |||||||| |||   || ||| ||||||||||||||||||||| |||| |||| || |  ||||||| || |||||| |||    
T  3413193 tttttactttctttttctattgctttggtttttgtgccaatacatgattttctttgtaaaaatatgactgtcaatgttgttgtcaaccaaattgatgttc 3413094  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  3413093 aaataacatt 3413084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 10902775 - 10902835
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 61  Q
    |||||||||||||||||| ||||||||||||   || ||| |||| |||||||||||||||    
T  10902775 tttttactttctctctctattgctttgatttttgtgccaatacatcattttctttgtaaaa 10902835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 42786651 - 42786549
Alignment:
Q  8 tttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaaataac 107  Q
    ||||||||||| || |||||||||   || ||| ||||  ||||||||||||||  ||||||||| || || ||||||| ||  ||||| ||||||||||    
T  42786651 tttctctctctctttctttgatttttgtgccaatacatatttttctttgtaaaatcatgattgtcaatttggttgtcaaccaagttgatgttcaaataac 42786552  T
Q  108 att 110  Q
    |||    
T  42786551 att 42786549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 5574326 - 5574435
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||| ||||| ||  ||||||||   ||| || ||||  ||||||||||||||| |||  |||| ||||  ||||||| || |||||| |||    
T  5574326 tttttactttctttctctattattttgatttttgtgttaatacatacttttctttgtaaaaatatgggtgtcaatatagttgtcaaccaaattgatgttc 5574425  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  5574426 aaataacatt 5574435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 34507206 - 34507095
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||||||| |||||||||||| | |||||| |||||||||| ||| |||||||||  |||||||| || ||||||||||||||||| |||    
T  34507206 tttttactttctctctctattgctttgattttcgtgtcaatacatgattttttttataaaaagatagttgtccatgtggttgtcaatcacattgatgttc 34507107  T
Q  101 aaataacatttc 112  Q
    ||||||||||||    
T  34507106 aaataacatttc 34507095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 41430152 - 41430043
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||| ||||||| |||||||| ||| | |||||| | ||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||    
T  41430152 tttttactttatctctctattgctttggttttcgtgtcaatatatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttc 41430053  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  41430052 aaataacatt 41430043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 42584873 - 42584982
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||| ||||||| |||||||||||  | |||||| | ||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||    
T  42584873 tttttactttatctctctattgctttgattctcgtgtcaatagatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttc 42584972  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  42584973 aaataacatt 42584982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 36352585 - 36352475
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatat-gattgtcaatcacattgatatt 99  Q
    |||||||||| ||||||| |||||||||||| | |||||| | ||||||||||||||||||||||| |||||||| | | ||||||||||||||||| ||    
T  36352585 tttttactttatctctctattgctttgattttcgtgtcaatatatgattttctttgtaaaaagatggttgtccatgtagtttgtcaatcacattgatgtt 36352486  T
Q  100 caaataacatt 110  Q
    |||||||||||    
T  36352485 caaataacatt 36352475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 34108849 - 34108748
Alignment:
Q  11 ctctctctgttgctttgatttccctgtcaacacatgattttctttgt-aaaaagatgatt-gtccatatgattgtcaatcacattgatattcaaataaca 108  Q
    ||||||||  |||||||||||   |||||| |||||||||||||| | ||||||||| || |||||| || ||||||||||||||||| |||||||||||    
T  34108849 ctctctctactgctttgatttttgtgtcaatacatgattttcttttttaaaaagatggtttgtccatgtggttgtcaatcacattgatgttcaaataaca 34108750  T
Q  109 tt 110  Q
    ||    
T  34108749 tt 34108748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 35822975 - 35822866
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||||||| ||||||||||||   || ||| ||||  ||||||||||||||| ||| ||||| |  || ||||||| || |||||| |||    
T  35822975 tttttactttctctctctattgctttgatttttgtgccaatacatatttttctttgtaaaaatatggttgtcaacgtggttgtcaaccaaattgatgttc 35822876  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  35822875 aaataacatt 35822866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 40854655 - 40854584
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtc 72  Q
    |||||||||||||||||| ||||||||||||   || ||||||||  ||||||||||||||| ||| |||||    
T  40854655 tttttactttctctctctattgctttgatttttgtgccaacacatacttttctttgtaaaaatatggttgtc 40854584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 44496762 - 44496699
Alignment:
Q  42 acatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaaata 105  Q
    |||| |||||||||||||||| ||| |||||||| | |||||||| || |||||| ||||||||    
T  44496762 acataattttctttgtaaaaatatggttgtccatttaattgtcaaacaaattgatgttcaaata 44496699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 30064520 - 30064569
Alignment:
Q  12 tctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 61  Q
    ||||||| |||||||||||| | |||||| |||| |||||||||||||||    
T  30064520 tctctctattgctttgattttcatgtcaatacatcattttctttgtaaaa 30064569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 8e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 15522425 - 15522534
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||| ||||| | |||||||| ||| | |||||| ||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||    
T  15522425 tttttactttatctctatattgctttggttttcgtgtcaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttc 15522524  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  15522525 aaataacatt 15522534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 31468989 - 31468880
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||| | ||||| || ||||  ||| | |||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  31468989 tttttactttatttctctattactttagttttcgtgtcaatacatgattttctttgtaaaaagatgattgtctatatggttgtcaatcacattgatattc 31468890  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  31468889 aaataacatt 31468880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 16019547 - 16019656
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||||||| ||||||||||||   ||||||| |||  |||||||| |||||| ||| ||||| ||||| |||||||||| |||||| |||    
T  16019547 tttttactttctctctctattgctttgatttttgtgtcaacgcatatttttctttataaaaatatggttgtcaatatgcttgtcaatcaaattgatgttc 16019646  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  16019647 aaataacatt 16019656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 34757909 - 34757800
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||| ||| ||| ||||||||   || ||||||||| ||||||||||||||| |||||||||  | ||||||||||||| |||||||||     
T  34757909 tttttactttctctttctattgatttgatttttgtgccaacacatgtttttctttgtaaaaatatgattgtcagtgtgattgtcaatcaaattgatattt 34757810  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  34757809 aaataacatt 34757800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 34759183 - 34759074
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||| ||| ||| ||||||||   || ||||||||| ||||||||||||||| |||||||||  | ||||||||||||| |||||||||     
T  34759183 tttttactttctctttctattgatttgatttttgtgccaacacatgtttttctttgtaaaaatatgattgtcagtgtgattgtcaatcaaattgatattt 34759084  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  34759083 aaataacatt 34759074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 31574940 - 31574852
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatca 89  Q
    |||||| ||||||||||| ||||||||||||   | |||| ||||||||||||||||||||||||| |||||||| || ||||||||||    
T  31574940 tttttattttctctctctattgctttgatttttgtatcaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatca 31574852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 193603 - 193710
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||| ||||||||||| || ||||||||| | |||||| ||||  ||||||||||||||| ||||||||| || || ||||||| || || ||| |||    
T  193603 tttttattttctctctctattactttgattttcgtgtcaatacatatttttctttgtaaaaacatgattgtctatttggttgtcaagcaaatagatgttc 193702  T
Q  101 aaataaca 108  Q
    ||||||||    
T  193703 aaataaca 193710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 11546901 - 11546794
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||||||| || ||||||| |   || ||| |||| ||||| ||||||||||  || |||||||| ||||||||||  | |||||| |||    
T  11546901 tttttactttctctctctattactttgatatttgtgccaatacataattttttttgtaaaaatgtggttgtccatttgattgtcaagtaaattgatgttc 11546802  T
Q  101 aaataaca 108  Q
    ||||||||    
T  11546801 aaataaca 11546794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 37997324 - 37997384
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 61  Q
    |||||||||||||||||| ||||||||||||   |||||| || | |||||||||||||||    
T  37997324 tttttactttctctctctattgctttgatttttgtgtcaatacctcattttctttgtaaaa 37997384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 55609165 - 55609058
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||| ||||||||||| || ||||||||| | || ||| ||||  ||||||||||||||| | | ||||| || || ||||||| || || ||| |||    
T  55609165 tttttattttctctctctattactttgattttcgtgccaatacatatttttctttgtaaaaacaaggttgtctatttggttgtcaagcaaatagatgttc 55609066  T
Q  101 aaataaca 108  Q
    ||||||||    
T  55609065 aaataaca 55609058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 47015123 - 47015185
Alignment:
Q  48 ttttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaaataacatt 110  Q
    ||||||||||||||| ||||||||| || || ||||||| || | |||| |||||||||||||    
T  47015123 ttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaactgatgttcaaataacatt 47015185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 29877370 - 29877479
Alignment:
Q  3 tttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaa 102  Q
    |||||||||||||||| ||| |||| ||| | |||||| |||| |||||||||||||||| ||| |||||||||||||||||||| | |||||| |||||    
T  29877370 tttactttctctctctattgttttggttttcgtgtcaatacataattttctttgtaaaaatatggttgtccatatgattgtcaataaaattgatgttcaa 29877469  T
Q  103 ataacatttc 112  Q
    ||||||||||    
T  29877470 ataacatttc 29877479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 30519625 - 30519516
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||| ||||| | |||||||| ||| | ||| || ||||||||||||||||||||||||| |||||||| || ||||||||||||||||| |||    
T  30519625 tttttactttatctctttattgctttggttttcgtgttaatacatgattttctttgtaaaaagatggttgtccatgtggttgtcaatcacattgatgttc 30519526  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  30519525 aaataacatt 30519516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 52437565 - 52437674
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||| ||| ||| |||||||||||| | | |||| |||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||     
T  52437565 tttttactttatctttctattgctttgattttcgtatcaatacataattttatttgtaaaaagatggttgtccatgtgattgtcaatcacattgatattt 52437664  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  52437665 aaataacatt 52437674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 34818045 - 34817936
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||| ||| ||||||||||||   || ||||||||  ||||||||||||||| ||| ||||| |||||||||||||  | |||||| |||    
T  34818045 tttttactttctctttctattgctttgatttttgtgccaacacatatttttctttgtaaaaatatggttgtcaatatgattgtcaactaaattgatgttc 34817946  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  34817945 aaataacatt 34817936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 29359814 - 29359923
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||| ||||||| |||||||  |||   |||||||||||  |||||||| |||||| ||| ||||| || || |||||||||| |||||| |||    
T  29359814 tttttactttttctctctattgcttttgtttttgtgtcaacacatacttttctttataaaaatatggttgtcaatgtggttgtcaatcaaattgatgttc 29359913  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  29359914 aaataacatt 29359923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 30745058 - 30745166
Alignment:
Q  2 ttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattca 101  Q
    ||||||||| ||||||| ||| |||| |||   |||||| |||| ||||||||||||| |  ||| ||||| ||||| |||||||||| ||| || ||||    
T  30745058 ttttactttatctctctattgttttggtttttgtgtcaatacataattttctttgtaagagtatggttgtctatatggttgtcaatcaaattaatgttca 30745157  T
Q  102 aataacatt 110  Q
    |||||||||    
T  30745158 aataacatt 30745166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 30766509 - 30766617
Alignment:
Q  2 ttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattca 101  Q
    ||||||||| ||||||| ||| |||| |||   |||||| |||| ||||||||||||| |  ||| ||||| ||||| |||||||||| ||| || ||||    
T  30766509 ttttactttatctctctattgttttggtttttgtgtcaatacataattttctttgtaagagtatggttgtctatatggttgtcaatcaaattaatgttca 30766608  T
Q  102 aataacatt 110  Q
    |||||||||    
T  30766609 aataacatt 30766617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 49570067 - 49570152
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaa 86  Q
    |||||||||||||||||| ||| ||||||||   || ||||||||  |||||||| |||||| ||| ||||| || ||||||||||    
T  49570067 tttttactttctctctctattgttttgatttttgtgccaacacatacttttctttataaaaatatggttgtcaatgtgattgtcaa 49570152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 23665726 - 23665655
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtc 72  Q
    |||||||||||||||||  |||||||| |||   |||||||||||  ||||||||||||||| ||| |||||    
T  23665726 tttttactttctctctcaattgctttggtttttgtgtcaacacatacttttctttgtaaaaatatggttgtc 23665655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 30973623 - 30973730
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||| ||| ||||||| || ||||||| |   |||||| ||||  |||||||||||||||  ||||||||||| |  ||||||| || |||||| |||    
T  30973623 tttttattttttctctctattactttgatatttgtgtcaatacatacttttctttgtaaaaatgtgattgtccatttagttgtcaagcaaattgatgttc 30973722  T
Q  101 aaataaca 108  Q
    ||||||||    
T  30973723 aaataaca 30973730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 49446747 - 49446685
Alignment:
Q  48 ttttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaaataacatt 110  Q
    |||||||||||||||  ||||||||||| |  ||||||| || |||||| |||||||||||||    
T  49446747 ttttctttgtaaaaatgtgattgtccatttagttgtcaagcaaattgatgttcaaataacatt 49446685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 6758791 - 6758681
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttg-taaaaagatgattgtccatatgattgtcaatcacattgatatt 99  Q
    |||||| ||| ||||||| |||||||| ||| | |||||| |||||||||||||||  ||||| ||| |||||||| || |||||||||| |||||| ||    
T  6758791 tttttattttatctctctattgctttggttttcgtgtcaatacatgattttctttgaaaaaaaaatggttgtccatgtggttgtcaatcatattgatgtt 6758692  T
Q  100 caaataacatt 110  Q
    |||||||||||    
T  6758691 caaataacatt 6758681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 16690570 - 16690679
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||| ||||| |||||||| |||   || ||||||||  ||||||||||||||| ||| ||||| || || ||||||| || ||||||||||    
T  16690570 tttttactttctttctctattgctttggtttttgtgccaacacatacttttctttgtaaaaatatggttgtcaatgtggttgtcaaccaaattgatattc 16690669  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  16690670 aaataacatt 16690679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 14321953 - 14321850
Alignment:
Q  3 tttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaa 102  Q
    |||| ||||||||||| |||||||| ||| | | |||| |||| |||||||||||||||  ||| ||||||||||| |||||||| | |||||| |||||    
T  14321953 tttattttctctctctattgctttggttttcatatcaatacataattttctttgtaaaagtatggttgtccatatggttgtcaattaaattgatgttcaa 14321854  T
Q  103 ataa 106  Q
    ||||    
T  14321853 ataa 14321850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 884512 - 884621
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||| ||| ||| ||||||||   || ||||||||  ||||| ||||||||| ||| ||||  |||||||||||||  | |||||| |||    
T  884512 tttttactttctctttctattgttttgatttttgtgccaacacatacttttcattgtaaaaatatggttgttaatatgattgtcaactaaattgatgttc 884611  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  884612 aaataacatt 884621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 9168156 - 9168059
Alignment:
Q  12 tctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaaataacatt 110  Q
    ||||||| |||||||| |||   || ||||||||  ||||||||||||||  ||||||||| ||||| ||||||| || |||||| |||||||||||||    
T  9168156 tctctctattgctttggtttttgtgccaacacatacttttctttgtaaaat-atgattgtcaatatggttgtcaaccaaattgatgttcaaataacatt 9168059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 41699524 - 41699585
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaa 62  Q
    |||||||||||||||||| ||  |||||||| | |||||| |||| ||||||||||||||||    
T  41699524 tttttactttctctctctattaatttgattttcgtgtcaatacataattttctttgtaaaaa 41699585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 22098326 - 22098433
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||||||||||||||| || ||||||| |   || ||| ||||  |||||||||||||||  || |||||||| | ||| |||| || |||||| |||    
T  22098326 tttttactttctctctctattactttgatatttgtgccaatacatacttttctttgtaaaaatgtggttgtccatttaattatcaagcaaattgatgttc 22098425  T
Q  101 aaataaca 108  Q
    ||||||||    
T  22098426 aaataaca 22098433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 110
Target Start/End: Original strand, 38493696 - 38493805
Alignment:
Q  2 ttttactttctctctctgttgctttgatttccc-tgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    ||||||||| ||||||| ||||||||||||    || ||||||||  |||||||||| |||| |||  |||| || || ||||||| || |||||| |||    
T  38493696 ttttactttatctctctattgctttgattttttgtgccaacacatacttttctttgttaaaatatgggtgtcaatgtggttgtcaaccaaattgatgttc 38493795  T
Q  101 aaataacatt 110  Q
    ||||||||||    
T  38493796 aaataacatt 38493805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 27612967 - 27613052
Alignment:
Q  23 ctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaaataaca 108  Q
    ||||||||| | |||||| ||||  ||||||||||||| | ||| |||||||| |||||||||| || || ||| |||||||||||    
T  27612967 ctttgattttcgtgtcaatacatatttttctttgtaaacatatggttgtccatttgattgtcaaacaaatagatgttcaaataaca 27613052  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 22079564 - 22079504
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaa 61  Q
    |||||||||||||||||| ||||||||||||   |||||| |||| |||||||||| ||||    
T  22079564 tttttactttctctctctattgctttgatttttgtgtcaatacatcattttctttgcaaaa 22079504  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 31869138 - 31869245
Alignment:
Q  1 tttttactttctctctctgttgctttgatttccctgtcaacacatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattc 100  Q
    |||||| ||||||||||| || ||||||||| | || ||| ||||  ||| ||||||||||| | || |||| || |||||||||| || || ||| |||    
T  31869138 tttttattttctctctctattactttgattttcgtgccaatacatattttcctttgtaaaaacaagagtgtctatttgattgtcaagcaaatagatgttc 31869237  T
Q  101 aaataaca 108  Q
    ||||||||    
T  31869238 aaataaca 31869245  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 33651132 - 33651198
Alignment:
Q  42 acatgattttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaaataaca 108  Q
    |||| |||||||||||||||| ||| ||||| || |||||||||| || || ||| |||||||||||    
T  33651132 acataattttctttgtaaaaatatggttgtctatttgattgtcaaacaaatggatgttcaaataaca 33651198  T

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Target: scaffold0662 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 1262 - 1324
Alignment:
Q  48 ttttctttgtaaaaagatgattgtccatatgattgtcaatcacattgatattcaaataacatt 110  Q
    ||||||||||||||| ||||||||| || || ||||||| || | |||| |||||||||||||    
T  1262 ttttctttgtaaaaatatgattgtcaatgtggttgtcaaccaaactgatgttcaaataacatt 1324  T

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