View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_50 (Length: 280)
Name: NF18153_low_50
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 4 - 275
Target Start/End: Complemental strand, 45521266 - 45520995
Alignment:
| Q |
4 |
caagaaaggagaagacgaattcaggggaattgggaaggaggatcatgatgacttcaccttgttggagtcccaatttgtgaagaccagaggcaactttacg |
103 |
Q |
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| T |
45521266 |
caagaaaggagaagacgaattcaggggaattgggaaggaggatcatgatgacttcaccttgttggagtcccaatttgtgaagaccagaggcaactttacg |
45521167 |
T |
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| Q |
104 |
ggaggtgagttggacgtcgtggtaggtgtagacctttccagtgggggcattgatgagacatggacgtgaaccgaattgggagagattttcaaaacaatat |
203 |
Q |
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| T |
45521166 |
ggaggtgagttggacgtcgtggtaggtgtagacctttccggtgggggcattgatgagacatggacgtgaaccgaattgggagagattttcaaaacaatat |
45521067 |
T |
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| Q |
204 |
gaatgaagcggtagatgttttgggatgtatatgtctggtagtttcgacttgaatattatttcctttgcttct |
275 |
Q |
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| T |
45521066 |
gaatgaagcggtagatggtttgggatgtatatgtctggtagtttcgacttgaatattatttcctttgtttct |
45520995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 349996 - 349765
Alignment:
| Q |
1 |
caccaagaaaggagaagacgaattcaggggaattgggaaggaggatcatgatgacttcaccttgttggagtcccaatttgtgaagaccagaggcaacttt |
100 |
Q |
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| T |
349996 |
caccgagaaaggcgaacacaaattccgggcaattagggagaagaaccatgatgacatccccctgttggatgccaagtttgttgagaccggaggcgacttt |
349897 |
T |
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| Q |
101 |
acgggaggtgagttggacgtcgtggtaggtgtagacctttccagtgggggcattgatgagacatggacgtgaaccgaattgggagagattttcaaaacaa |
200 |
Q |
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| T |
349896 |
ttgcgcggtgagttggacatcatagtaggtgtaaatttcagcagttggagcattgatgaggcaaggacgtgaaccatattttgatagattttcaaagcaa |
349797 |
T |
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| Q |
201 |
tatgaatgaagcggtagatgttttgggatgta |
232 |
Q |
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| T |
349796 |
tatgaatgaagaggaaggtgtttgggaatgta |
349765 |
T |
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