View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_56 (Length: 245)
Name: NF18153_low_56
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 31797616 - 31797400
Alignment:
| Q |
1 |
tatagaaatgcatgagcagggggccaatatatgaaatagtatatactttgcaagtataggcttgcttgggattcctggaaccattgataaacttgaaact |
100 |
Q |
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| T |
31797616 |
tatagaaatgcatgagcagggggccaatatatgaaatagtatatactttgcaagtataggcttgcttgggattcctcgaaccattgataaacttgaaact |
31797517 |
T |
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| Q |
101 |
gaaaactcaatgcctttgttcatgtgagagctgggactatgatatcctgcataaaaagacaatgaaaatgtgaaacatcatcagaatactgcattattgc |
200 |
Q |
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| T |
31797516 |
gaaaactcaatgcttttgttcatgtgagagctggga------------gcataaaaagacaatgaaaatgtgaaacatcatcagaatactgcattattgc |
31797429 |
T |
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| Q |
201 |
tcatacaaggccaaaactaggtagataat |
229 |
Q |
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| T |
31797428 |
tcatacaaggccaaaactaggtagataat |
31797400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 225
Target Start/End: Complemental strand, 31786209 - 31786007
Alignment:
| Q |
21 |
gggccaatatatgaaatagtatatactttgcaagtataggcttgcttgggattcctggaaccattgataaacttgaaactgaaaactcaatgcctttgtt |
120 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31786209 |
gggcctatatatgaaatagtatatactttgcaagcataggcttgattgggattcctggaaccattgataaacttgaaactgaaaactcaatgcctttgtt |
31786110 |
T |
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| Q |
121 |
catgtgagagctgggactatgatatcctgcataaaaagacaatgaaaatgtgaaacatcatcagaatactgcattattgctcatacaaggccaaaactag |
220 |
Q |
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| T |
31786109 |
ca--tgagagttggtactatgatatcctgcataaaaagacaatgaaaatatgaaacatcatcagaatactgcattattgctcatacaaggccaaaactag |
31786012 |
T |
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| Q |
221 |
gtaga |
225 |
Q |
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||||| |
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| T |
31786011 |
gtaga |
31786007 |
T |
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