View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_58 (Length: 242)
Name: NF18153_low_58
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_58 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 31963498 - 31963722
Alignment:
| Q |
1 |
aaagctcaacctacagctaccatgacgagttgtgtgattttgatgtcttgatagcattatatgcctgtcaattcatcttttttcattttgttaattgagt |
100 |
Q |
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| T |
31963498 |
aaagctcaacctacagctaccatgacgagttgtgtgattttgatgtcttgatagcattatatgcctgtcaattcatcttttttcattttgttaattgagt |
31963597 |
T |
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| Q |
101 |
tgatttgtaatcagactaataacatttaacagctctaaattataatgcttccagtttgattaacatcatcactagctcggtaatgctttcaactttggag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31963598 |
tgatttgtaatcagactaataacatttaacagctctaaattataatgcttccagtttgattaacatcatcactagctcggtaatgctttcaactttggag |
31963697 |
T |
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| Q |
201 |
gatggaaagattgtgaagggccttg |
225 |
Q |
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| T |
31963698 |
gatggaaagatcgtaaagggccttg |
31963722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 31948611 - 31948721
Alignment:
| Q |
115 |
actaataacatttaacagctctaaattataatgcttccagtttgattaacatcatcactagctcggtaatgctttcaactttggaggatggaaagattgt |
214 |
Q |
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|||||||| |||||||| | | ||||||||||||| |||||| |||||||| |||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
31948611 |
actaataatatttaacatatttcaattataatgctttcagtttatttaacatcgtcaccggctctgtaatgctttcaactttggaggatggaaagattgt |
31948710 |
T |
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| Q |
215 |
gaagggccttg |
225 |
Q |
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|||||||||| |
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| T |
31948711 |
aaagggccttg |
31948721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 31975071 - 31975116
Alignment:
| Q |
180 |
gtaatgctttcaactttggaggatggaaagattgtgaagggccttg |
225 |
Q |
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|||||||||||||| ||||||||||||| |||||| ||||| |||| |
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| T |
31975071 |
gtaatgctttcaaccttggaggatggaacgattgtaaagggacttg |
31975116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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