View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_59 (Length: 240)
Name: NF18153_low_59
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 36399746 - 36399522
Alignment:
| Q |
1 |
ttggtgcgcaagagtataataacgttcagagatgatgaagaacttgcaagaggtgaagtcatctcacaaaaactcctccatgcaatcgaagaatctctct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36399746 |
ttggtgcgcaagagtataataacgttcagagatgatgaagaacttgcaagaggtgaagtcatctcacaaaaactcctccatgcaatcgaagaatctctct |
36399647 |
T |
|
| Q |
101 |
cagcaattgttataatctctaaaaactatgctgactcagcttggtgtttggatgagttagtcaagattctcgaatccaaacagttgttgggacaacaggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36399646 |
cagcaattgttataatctctaaaaactatgctgactcagcttggtgtttggatgagttagtcaagattctcgaatccaaacggttgttgggacaacaggt |
36399547 |
T |
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| Q |
201 |
gttcccaatcttctacggtgtagat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
36399546 |
gttcccaatcttctacggtgtagat |
36399522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 36408873 - 36408649
Alignment:
| Q |
1 |
ttggtgcgcaagagtataataacgttcagagatgatgaagaacttgcaagaggtgaagtcatctcacaaaaactcctccatgcaatcgaagaatctctct |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| |
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| T |
36408873 |
ttggtgcgcaagagtataataacgttcagagatgatgaagaacttgcaagaggtgaagtcatctcacaaaaactactccttgcaattgaagaatctctct |
36408774 |
T |
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| Q |
101 |
cagcaattgttataatctctaaaaactatgctgactcagcttggtgtttggatgagttagtcaagattctcgaatccaaacagttgttgggacaacaggt |
200 |
Q |
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| T |
36408773 |
cagcagttctcataatctccaaaaactatgcgaactcagcttggtgtttggatgagttagtcaagattcttgaatccaaacgtttgttaggacaacaagt |
36408674 |
T |
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| Q |
201 |
gttcccaatcttctacggtgtagat |
225 |
Q |
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||||||| ||||||| ||||||||| |
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| T |
36408673 |
gttcccagtcttctatggtgtagat |
36408649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 36393475 - 36393261
Alignment:
| Q |
1 |
ttggtgcgcaagagtataataacgttcagagatgatgaagaacttgcaagaggtgaagtcatctcacaaaaactcctccatgcaatcgaagaatctctct |
100 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| ||||||||||||| |
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| T |
36393475 |
ttggtgcgtaagagtataataactttcagagatgatgaagaacttgcaagaggtgatgtcatctcacaaaaactccttcgtgcaattgaagaatctctct |
36393376 |
T |
|
| Q |
101 |
cagcaattgttataatctctaaaaactatgctgactcagcttggtgtttggatgagttagtcaagattctcgaatccaaacagttgttgggacaacaggt |
200 |
Q |
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|||||||||| |||||| | |||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| || || |
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| T |
36393375 |
cagcaattgtcataatccccaaaaactatgctaactctacttgttgtttggatgagttagtcaagattctcgaatccaaacgtttgttaggacatcaagt |
36393276 |
T |
|
| Q |
201 |
gttcccaatcttcta |
215 |
Q |
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|||||||||||||| |
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| T |
36393275 |
tttcccaatcttcta |
36393261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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