View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_60 (Length: 239)
Name: NF18153_low_60
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_60 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 1549154 - 1548939
Alignment:
| Q |
11 |
gaaaagaaataaaaaaggaaacaatgacttaccaggtcttgtttgtttgcgaacaccaatatgattttgttaagcatagaagggtcatttatggttgtct |
110 |
Q |
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| T |
1549154 |
gaaaagaaataaaaaaggaaacaatgacttaccaggtcttgtttgtttgtgaacaccaatatgattttgttaagcatagaagggtcatttatggttgtct |
1549055 |
T |
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| Q |
111 |
gcaagtaatccatg----aatctattcaatttataatcgccagtaatatacacacgttacacatatataatactatggtgaaatttgattttaccacctg |
206 |
Q |
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| T |
1549054 |
gcaagtaatccatgaattaatctattcaatttataatcgctagtaatatacacacgttacacatatataatactatagtgaaatttgattttaccacctg |
1548955 |
T |
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| Q |
207 |
aaattcctcctttact |
222 |
Q |
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| T |
1548954 |
aaattcctcctttact |
1548939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 1545168 - 1544975
Alignment:
| Q |
22 |
aaaaaggaaacaatgacttaccaggtcttgtttgtttgcgaacaccaatatgattttgttaagcatagaagggtcatttatggttgtctgcaagtaatcc |
121 |
Q |
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| T |
1545168 |
aaaaaggaaacaaagacttacaaggtcctgtttgtttgcaaacaccagtatgatattgttaagcatagaaggctcatttatggttgtctgcaagtaatcc |
1545069 |
T |
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| Q |
122 |
atgaatctattcaatttataatcgccagtaatatacacacgttacacatatataatactatggtgaaatttgattttaccacctgaaattcctcctttac |
221 |
Q |
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| T |
1545068 |
atgaatcaattcagtttataatcgccagtaatacgc-------acacatatataatactataatgaaatttgattttaccacctgaaattcctgctttac |
1544976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 128
Target Start/End: Complemental strand, 1541556 - 1541466
Alignment:
| Q |
38 |
cttaccaggtcttgtttgtttgcgaacaccaatatgattttgttaagcatagaagggtcatttatggttgtctgcaagtaatccatgaatc |
128 |
Q |
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| T |
1541556 |
cttaccaggtcctgtttgtttgcaaataccaatatgacactattaagcataaatgggtcatttatgattgcctgcaagtaatcaatgaatc |
1541466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 29727639 - 29727722
Alignment:
| Q |
40 |
taccaggtcttgtttgtttgcgaacaccaatatgattttgttaagcatagaagggtcatttatggttgtctgcaagtaatccat |
123 |
Q |
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| T |
29727639 |
taccaggtcttgtttgttggcaagtaccaagatgacactgttgagcataaacgggtcgtttatgattgtctgcaagtaatccat |
29727722 |
T |
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