View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_63 (Length: 228)
Name: NF18153_low_63
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_63 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 31963292 - 31963519
Alignment:
| Q |
1 |
gaaatgttctgaatgtggttgagtgagtacagaactcagccaccatgatatttgtatacatttcataattaattacatgttaagtttataaggagaagta |
100 |
Q |
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| T |
31963292 |
gaaatgttctgaatgtggttgagtgagtacagaactcagccaccatgatatttgtatacatttcataattaattacatgttaagtttataaggagaagta |
31963391 |
T |
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| Q |
101 |
atacaaatccaactccctaaatacatgaatctaagacttaaatgctcctatgatcacactatttccaacaagagttcatattatataaacaatgaagact |
200 |
Q |
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| T |
31963392 |
atacaaatccaactccctaaatacatgaatctaagacttaaatgctcctatgatcacactatttccaacaagagttcatattatataaacaatgaagact |
31963491 |
T |
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| Q |
201 |
ccagggaaagctcaacctacagctacca |
228 |
Q |
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| T |
31963492 |
ccagggaaagctcaacctacagctacca |
31963519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 36084532 - 36084404
Alignment:
| Q |
7 |
ttctgaatgtggttgagtgagtacagaactcagccaccatgatatttgtatacatttcataattaattacatgttaagtttataaggagaagta-ataca |
105 |
Q |
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| T |
36084532 |
ttctgaatgtgcttgagtgagtaaagaactcagcaaccatgttatttatttagactccattattaataacatgttatgtttacaaggagaaatacatgca |
36084433 |
T |
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| Q |
106 |
aatccaactccctaaatacatgaatctaa |
134 |
Q |
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| T |
36084432 |
ggtccaactccctaaagacatgaatctaa |
36084404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 889685 - 889558
Alignment:
| Q |
1 |
gaaatgttctgaatgtggttgagtgagtacagaactcagccaccatgatatttgtatacatttcataattaattacatgttaagtttataaggagaagt- |
99 |
Q |
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| T |
889685 |
gaaattttctgaatgtgctcgagtaagtaaagcagtcagccaccatgatatttatatacacttcataattaattacatgttatgtttacaaggataaata |
889586 |
T |
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| Q |
100 |
aatacaaatccaactccctaaatacatg |
127 |
Q |
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| T |
889585 |
aatataggtccaactccctaaatgcatg |
889558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 45567020 - 45566950
Alignment:
| Q |
19 |
ttgagtgagtacagaa-ctcagccaccatgatatttgtatacatttcataattaattacatgttaagttta |
88 |
Q |
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| T |
45567020 |
ttgagtgagtaaagaaactcagtaaccatgatatttatatacacttcatgattaattacatgttatgttta |
45566950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 15661838 - 15661749
Alignment:
| Q |
46 |
tgatatttgtatacatttcataattaattacatgttaagtttataaggagaagtaa-tacaaatccaactccctaaatacatgaatctaa |
134 |
Q |
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| T |
15661838 |
tgatatttatatacaatccataattaactacatgttatgtttacaaggagaaataaatacaactccagctccctgaatacatgaatctaa |
15661749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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