View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18153_low_65 (Length: 219)

Name: NF18153_low_65
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18153_low_65
NF18153_low_65
[»] chr3 (2 HSPs)
chr3 (1-200)||(26452907-26453106)
chr3 (1-47)||(26452805-26452851)
[»] chr4 (9 HSPs)
chr4 (70-201)||(23676337-23676469)
chr4 (5-68)||(21538951-21539014)
chr4 (12-52)||(3703584-3703624)
chr4 (5-52)||(5979806-5979853)
chr4 (11-53)||(12329026-12329068)
chr4 (12-58)||(21538844-21538890)
chr4 (10-52)||(25812263-25812305)
chr4 (26-63)||(2605367-2605404)
chr4 (12-53)||(53860895-53860936)
[»] scaffold0110 (2 HSPs)
scaffold0110 (10-68)||(11425-11483)
scaffold0110 (10-68)||(19162-19220)
[»] chr5 (7 HSPs)
chr5 (11-63)||(10818875-10818927)
chr5 (9-68)||(10818787-10818845)
chr5 (4-49)||(4639521-4639566)
chr5 (9-68)||(14613533-14613592)
chr5 (12-65)||(4192001-4192054)
chr5 (11-63)||(8367019-8367071)
chr5 (12-52)||(35924595-35924635)
[»] chr1 (3 HSPs)
chr1 (10-69)||(49632935-49632995)
chr1 (12-46)||(11985458-11985492)
chr1 (11-63)||(30018687-30018740)
[»] chr6 (2 HSPs)
chr6 (12-59)||(13613749-13613796)
chr6 (5-46)||(30351451-30351492)
[»] chr8 (2 HSPs)
chr8 (11-59)||(9040955-9041003)
chr8 (9-68)||(25939281-25939340)
[»] chr7 (2 HSPs)
chr7 (19-63)||(36390712-36390756)
chr7 (15-47)||(39933632-39933664)
[»] chr2 (2 HSPs)
chr2 (11-59)||(37096596-37096644)
chr2 (5-63)||(13793669-13793727)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 26452907 - 26453106
Alignment:
Q  1 ttgctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctcgctttatttttgtcctactgggctttgtgtgc 100  Q
    ||||||| || ||||||||||||||||||||||||||| ||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26452907 ttgctggagtatttttggtcattttcatgtgtttctaggaaataatggatgtccaaaaaacaattctcgctttatttttgtcctactgggctttgtgtgc 26453006  T
Q  101 tgttgtctcccatcactgacttaagggtaaatgctcacggaccctgtgaattgttaaaatttcacatggggtgagaaaaacaagcattgaatcctataat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26453007 tgttgtctcccatcactgacttaagggtaaatgctcacggaccccgtgaattgttaaaatttcacatggggtgagaaaaacaagcattgaatcctataat 26453106  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26452851 - 26452805
Alignment:
Q  1 ttgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 47  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26452851 ttgctggggtgtttttggtcattttcatgtgtttctagaaaacaatg 26452805  T

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Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 70 - 201
Target Start/End: Complemental strand, 23676469 - 23676337
Alignment:
Q  70 ctttatttttgtcctactgggctttgtgtgctgttgtctcccatcactgacttaagggtaaatgctcacggaccctgtgaattg-ttaaaatttcacatg 168  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||||||||| | |||||||||||||||||||  ||||||| |||||||||||||||    
T  23676469 ctttatttttgtcctactgggatttctgtgctggtgtctcccatcactgacttgacggtaaatgctcacggaccccttgaattgcttaaaatttcacatg 23676370  T
Q  169 gggtgagaaaaacaagcattgaatcctataatt 201  Q
    | |||||||||||||||||||||||||| ||||    
T  23676369 gagtgagaaaaacaagcattgaatcctagaatt 23676337  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Original strand, 21538951 - 21539014
Alignment:
Q  5 tggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 68  Q
    |||||||||||||||||||| | ||||||||||| ||||| |||| ||  ||||||||||||||    
T  21538951 tggggtgtttttggtcatttccttgtgtttctaggaaacattgaaagtttaaaaagcaattctc 21539014  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 3703624 - 3703584
Alignment:
Q  12 tttttggtcattttcatgtgtttctagaaaacaatgaatgt 52  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  3703624 tttttggtcattttcatgtgtttctaaaaaacaatggatgt 3703584  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 5979806 - 5979853
Alignment:
Q  5 tggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 52  Q
    |||||||||||||||||||| ||| ||||||||  |||||||||||||    
T  5979806 tggggtgtttttggtcatttccatttgtttctaagaaacaatgaatgt 5979853  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Original strand, 12329026 - 12329068
Alignment:
Q  11 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtc 53  Q
    ||||||| ||||||||||||||||||| ||||||||| |||||    
T  12329026 gtttttgatcattttcatgtgtttctaaaaaacaatggatgtc 12329068  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 21538890 - 21538844
Alignment:
Q  12 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaa 58  Q
    |||||||| |||| |||||||||||||||||||||| ||||| ||||    
T  21538890 tttttggttatttccatgtgtttctagaaaacaatggatgtcaaaaa 21538844  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 25812305 - 25812263
Alignment:
Q  10 tgtttttggtcattttcatgtgtttctagaaaacaatgaatgt 52  Q
    |||||||| |||||| |||||||||||||||||||||| ||||    
T  25812305 tgtttttgatcatttccatgtgtttctagaaaacaatggatgt 25812263  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 2605404 - 2605367
Alignment:
Q  26 catgtgtttctagaaaacaatgaatgtccaaaaagcaa 63  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  2605404 catgtgtttctaggaaacaatgaatgtcaaaaaagcaa 2605367  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 53860895 - 53860936
Alignment:
Q  12 tttttggtcattttcatgtgtttctagaaaacaatgaatgtc 53  Q
    ||||||||||||| ||||||||||||| |||||||| |||||    
T  53860895 tttttggtcatttccatgtgtttctaggaaacaatggatgtc 53860936  T

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Target: scaffold0110 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 11483 - 11425
Alignment:
Q  10 tgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 68  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||    
T  11483 tgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaattctc 11425  T

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Target: scaffold0110; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 19220 - 19162
Alignment:
Q  10 tgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 68  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||  ||||||||||||||    
T  19220 tgtttttggtcattttcatatgtttctaggaaacaatcaatgtgaaaaaagcaattctc 19162  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 10818875 - 10818927
Alignment:
Q  11 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 63  Q
    |||||||||||||| ||||||||| |||||||||||| ||||| |||||||||    
T  10818875 gtttttggtcatttccatgtgtttttagaaaacaatggatgtcaaaaaagcaa 10818927  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 10818845 - 10818787
Alignment:
Q  9 gtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 68  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||  ||||||||||||||    
T  10818845 gtgtttttggtaattttaatgtgtttctagaaaacaatg-atgttaaaaaagcaattctc 10818787  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 4639521 - 4639566
Alignment:
Q  4 ctggggtgtttttggtcattttcatgtgtttctagaaaacaatgaa 49  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||    
T  4639521 ctggggtgtttttgatcattttcatgtgtttctaagaaacaatgaa 4639566  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 14613592 - 14613533
Alignment:
Q  9 gtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 68  Q
    ||||||||||| |||||||||||||||||| |||||||| |||    |||||||||||||    
T  14613592 gtgtttttggttattttcatgtgtttctaggaaacaatggatgcgagaaaagcaattctc 14613533  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 4192001 - 4192054
Alignment:
Q  12 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaatt 65  Q
    ||||||||||||||||||||||| ||| |||||||| ||||  ||| |||||||    
T  4192001 tttttggtcattttcatgtgtttgtaggaaacaatggatgtgtaaacagcaatt 4192054  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 8367071 - 8367019
Alignment:
Q  11 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 63  Q
    ||||||||||||||  ||| |||||||| |||||||| ||||| |||||||||    
T  8367071 gtttttggtcatttctatgggtttctaggaaacaatggatgtcaaaaaagcaa 8367019  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 35924635 - 35924595
Alignment:
Q  12 tttttggtcattttcatgtgtttctagaaaacaatgaatgt 52  Q
    ||||||||||||||||||| ||||||||||| |||| ||||    
T  35924635 tttttggtcattttcatgtttttctagaaaataatggatgt 35924595  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 49632935 - 49632995
Alignment:
Q  10 tgtttttggtcattttcatgtgtttctagaaaacaatgaatgtc-caaaaagcaattctcg 69  Q
    ||||||||||||||| |||||||||||||||| ||||| |||||  |||||||||||||||    
T  49632935 tgtttttggtcatttccatgtgtttctagaaatcaatggatgtcaaaaaaagcaattctcg 49632995  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 11985492 - 11985458
Alignment:
Q  12 tttttggtcattttcatgtgtttctagaaaacaat 46  Q
    |||||||||||||||||||||||||||||||||||    
T  11985492 tttttggtcattttcatgtgtttctagaaaacaat 11985458  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 30018687 - 30018740
Alignment:
Q  11 gtttttggtcattttcatgtg-tttctagaaaacaatgaatgtccaaaaagcaa 63  Q
    |||||||||||||| |||||| ||||||| |||||||| ||||| |||||||||    
T  30018687 gtttttggtcatttccatgtgttttctaggaaacaatggatgtcaaaaaagcaa 30018740  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 13613796 - 13613749
Alignment:
Q  12 tttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 59  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||    
T  13613796 tttttggtcattttcatgtgtttctagaaaacaatagatgtcgaaaaa 13613749  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 30351492 - 30351451
Alignment:
Q  5 tggggtgtttttggtcattttcatgtgtttctagaaaacaat 46  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  30351492 tggggtgtttttggtcattttcatatgtttctaggaaacaat 30351451  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 9040955 - 9041003
Alignment:
Q  11 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 59  Q
    |||||| ||||||| ||||||||||||| |||||||||||||| |||||    
T  9040955 gtttttagtcatttccatgtgtttctaggaaacaatgaatgtcaaaaaa 9041003  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 25939340 - 25939281
Alignment:
Q  9 gtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaattctc 68  Q
    |||||||||||| ||| ||| ||||||||| ||||||||||| | |||||| ||||||||    
T  25939340 gtgtttttggtcttttccatatgtttctaggaaacaatgaatattcaaaaaacaattctc 25939281  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 36390756 - 36390712
Alignment:
Q  19 tcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 63  Q
    |||||||||||||||||||||||||| | |||||| |||||||||    
T  36390756 tcattttcatgtgtttctagaaaacactaaatgtcaaaaaagcaa 36390712  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 47
Target Start/End: Original strand, 39933632 - 39933664
Alignment:
Q  15 ttggtcattttcatgtgtttctagaaaacaatg 47  Q
    |||||||||||||||||||||||||||| ||||    
T  39933632 ttggtcattttcatgtgtttctagaaaataatg 39933664  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 37096644 - 37096596
Alignment:
Q  11 gtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaa 59  Q
    ||||||| |||||| |||||||||||||||||||||||| ||| |||||    
T  37096644 gtttttgatcatttccatgtgtttctagaaaacaatgaaggtcaaaaaa 37096596  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 13793727 - 13793669
Alignment:
Q  5 tggggtgtttttggtcattttcatgtgtttctagaaaacaatgaatgtccaaaaagcaa 63  Q
    ||||||||||||||||||| |||| ||||||||  |||||||| ||||| ||| |||||    
T  13793727 tggggtgtttttggtcattctcatatgtttctaagaaacaatggatgtcaaaacagcaa 13793669  T

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