View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_7 (Length: 654)
Name: NF18153_low_7
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 12 - 503
Target Start/End: Complemental strand, 46290714 - 46290228
Alignment:
| Q |
12 |
cagcagagaggcgtgtattgatcagtcaagaggcagtaggacaataggtattcaataggaaaggggatggatggtgagggtgttctcttcataaagtgct |
111 |
Q |
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| T |
46290714 |
cagcagagaggcgtgtattgatcagtcaagaggcagtaggacaataggtattcaataggaaaggggatggatggtgagggtgttctcttcataaagtgct |
46290615 |
T |
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| Q |
112 |
cgttcactttagctttctgaattctagcaataatacagattttctttcactcttttgtccnnnnnnnctgcctttatgttttatcacaaactactaggat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| ||||| |
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| T |
46290614 |
cgttcactttagctttctgaattctagcaataatacagattttctttcactc--ttgtcctttttttcggcctttatgttttatcacaaactaccaggat |
46290517 |
T |
|
| Q |
212 |
cctaacatagttcaggccaaattacttcgggattacaaacttgaaaaatattttgattaatatttctcacacaagagtaagtctatatacatctattctt |
311 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46290516 |
cctaacatagttcaggccaaattacttcggaattacaaacttgaaaaatattttgattaatatttctcacacaagagtaagtctatatacatcta---tt |
46290420 |
T |
|
| Q |
312 |
cttcnnnnnnntccttagaagaaaataagtgaagatgaagaaaggatgacatttcagacataagaaaaatgtgcctacatgaaaaatttactaaactgaa |
411 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46290419 |
cttcaaaaaaatccttagaagaaaataagtgaagatgaagaaaggatgacatttcagacataagaaaaatgtgcctacatgaaaaatttactaaactgaa |
46290320 |
T |
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| Q |
412 |
tcattaagaaaacatnnnnnnnntatcgacattaacagtgatgaacttacccgacggtcaaagaacctaatggccctcggatcctgtaacac |
503 |
Q |
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| T |
46290319 |
tcattaagaaaacataaaaaaaatatcgacattaacagtgatgaacttacccgacggtcaaagaacctaatggccctcggatcctgtaacac |
46290228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 547 - 654
Target Start/End: Complemental strand, 46290184 - 46290077
Alignment:
| Q |
547 |
gccaagtcacaatctatgacaaaagcactacactgctgtaagtaaaacaatatagaatagatggcatttgcttttaagcaacaaagagataatgaataaa |
646 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46290184 |
gccaagtcacaatctatgacaaaagcactacactgctgtaagtaaaacaatatagaatagatggcatttgcttttaagcaacaaagagataatgaataaa |
46290085 |
T |
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| Q |
647 |
caatgcat |
654 |
Q |
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|||||||| |
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| T |
46290084 |
caatgcat |
46290077 |
T |
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