View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18153_low_9 (Length: 564)
Name: NF18153_low_9
Description: NF18153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18153_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 492
Target Start/End: Complemental strand, 43976534 - 43976049
Alignment:
| Q |
19 |
ggggaggagcggctttgtatcctttgtggcaggatggacgagtcggcaatccatctttttattcattgtgagtttgtggcaaaattgtgggttatggtgc |
118 |
Q |
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| T |
43976534 |
ggggaggagcggctttgtgtcctttgtggtaggatggacgagtcggcaatccatctttttattcattgtgagtttgtggcaaaattgtgggttatggtgc |
43976435 |
T |
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| Q |
119 |
ttaattgggtgaatttgaattttattactcctccatctttgactactcatcttgattgttggtttaatgaggttagttctnnnnnnntgaggaaaggttt |
218 |
Q |
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| T |
43976434 |
ttaattgggtgaatttgaattttattactcctccatctttgactactcatcttgattgttggtttaatgaggttagttctaaaaaaatgaggaaaggttt |
43976335 |
T |
|
| Q |
219 |
gttgttgatttggcatgctaccattttgactatttggcttgagaggaatgataggattttcaaaggggctaaaaaggatgtgggggagatttttgatgcg |
318 |
Q |
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| T |
43976334 |
gttgttgatttggcatgctaccattttgattatttggcttgagaggaatgataggattttcaaaggggctaaaaaggatgtgggggagatttttgatgcg |
43976235 |
T |
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| Q |
319 |
gttaagaccttatcttggtgttggtgtcttaatagtagattggaaattggtgcttttatgttcttcgaatggtgttggaat---------------tcta |
403 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
43976234 |
gttaagaccttatcttggtgttggtgtcgtaa---tagattggaaattggtgcttttatgttcttcaaatggtgttggaattctagggattgtttatcta |
43976138 |
T |
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| Q |
404 |
ggtaggtgttttttggtgcagctgcccggattgtggtgcggtgtacaaatagcccaactgcacggcagtttgttttagcctacagttgg |
492 |
Q |
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| T |
43976137 |
ggtaggtgttttttggtgcagctgcccggattgtggtgcggtgtacaaatagcccaactgcacggcagtttgttttagcctacagttgg |
43976049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 58 - 405
Target Start/End: Complemental strand, 18021880 - 18021535
Alignment:
| Q |
58 |
gagtcggcaatccatctttttattcattgtgagtttgtggcaaaattgtgggttatggtgcttaattgggtgaatttgaattttattactcctccatctt |
157 |
Q |
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|||||||||| ||||||||| ||||||||||| | | ||||| ||||| |||||| | ||||||||||| ||||||||||||||||||||| || |
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| T |
18021880 |
gagtcggcaactcatctttttcttcattgtgaggtagcagcaaaggtgtggcatatggttttgaattgggtgaacttgaattttattactcctccaaatt |
18021781 |
T |
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| Q |
158 |
tgactactcatcttgattgttggtttaatgaggttagttctnnnnnnn-tgaggaaaggtttgttgttgatttggcatgctaccattttgactatttggc |
256 |
Q |
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| T |
18021780 |
tggctactcaccttgattgttggtttaatgaggtttgtgctaaaaaaagtgaggaatggattgttgatgatttgacatgctaccgtttggaacatttggc |
18021681 |
T |
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| Q |
257 |
ttgagaggaatgataggattttcaaaggggctaaaaaggatgtgggggagatttttgatgcggttaagaccttatcttggtgttggtgtcttaatagtag |
356 |
Q |
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| T |
18021680 |
tagagaggaatgatcggatattcaaaggagtcaataaggaggtgggtgagatttttgacgcgataaagactttatcttggtgttggtgtctcaa---tag |
18021584 |
T |
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| Q |
357 |
attggaaattggtgcttttatgttcttcgaatggtgttggaattctagg |
405 |
Q |
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|||| |||| ||||| ||| ||||||| ||||||||||||||| ||||| |
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| T |
18021583 |
attgaaaataggtgcatttgtgttctttgaatggtgttggaatcctagg |
18021535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 73 - 353
Target Start/End: Complemental strand, 3535982 - 3535702
Alignment:
| Q |
73 |
ctttttattcattgtgagtttgtggcaaaattgtgggttatggtgcttaattgggtgaatttgaattttattactcctccatctttgactactcatcttg |
172 |
Q |
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|||||| ||| |||||| |||||||| ||| |||| ||| |||| ||||||||| |||| |||||||||||||||| || || ||| | ||| | || |
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| T |
3535982 |
ctttttcttcgttgtgactttgtggccaaagtgtgaattaaggtgtttaattgggcgaatgtgaattttattactccgccttcgttgggaattcaccatg |
3535883 |
T |
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| Q |
173 |
attgttggtttaatgaggttagttctnnnnnnntgaggaaaggtttgttgttgatttggcatgctaccattttgactatttggcttgagaggaatgatag |
272 |
Q |
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| T |
3535882 |
attgttgattcaatgaggtaaatttcaagaaagtaaggaaagggataatgatgatttggcatgctaccatttggactatttagcttgagagaaatgatag |
3535783 |
T |
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| Q |
273 |
gattttcaaaggggctaaaaaggatgtgggggagatttttgatgcggttaagaccttatcttggtgttggtgtcttaatag |
353 |
Q |
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||| |||||||||| ||| ||||| |||| |||||||||| |||| | ||| |||||| | ||||||||| |||||||| |
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| T |
3535782 |
gatgttcaaaggggttaacaaggaagtggaggagattttttatgctatcaaggtcttatcgtagtgttggtgccttaatag |
3535702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 513
Target Start/End: Complemental strand, 31647083 - 31647047
Alignment:
| Q |
477 |
tttagcctacagttggtttaatttgttgctggttttt |
513 |
Q |
| |
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|||||||| ||||||||||| |||||||||||||||| |
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| T |
31647083 |
tttagccttcagttggtttagtttgttgctggttttt |
31647047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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