View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18154_low_2 (Length: 496)

Name: NF18154_low_2
Description: NF18154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18154_low_2
NF18154_low_2
[»] chr7 (3 HSPs)
chr7 (17-485)||(6610959-6611409)
chr7 (137-355)||(17292841-17293060)
chr7 (17-62)||(17292709-17292754)
[»] chr8 (9 HSPs)
chr8 (137-343)||(14727421-14727627)
chr8 (137-285)||(28865680-28865828)
chr8 (147-285)||(15329583-15329721)
chr8 (147-285)||(15509952-15510090)
chr8 (218-343)||(29552461-29552589)
chr8 (156-245)||(30648656-30648745)
chr8 (144-247)||(26089017-26089120)
chr8 (17-76)||(30648837-30648896)
chr8 (25-84)||(26089171-26089230)
[»] chr1 (1 HSPs)
chr1 (137-248)||(26086622-26086733)
[»] chr3 (2 HSPs)
chr3 (23-76)||(4819862-4819915)
chr3 (137-252)||(4819674-4819789)


Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 485
Target Start/End: Original strand, 6610959 - 6611409
Alignment:
Q  17 gatagatggcagttgcaacgagagtcgcaattatcaaccaagtgttacggttctcctctgtcatatttgctctaattctgaacttagactgtctacgtcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6610959 gatagatggcagttgcaacgagagtcgcaattatcaaccaagtgttacggttctcctctgtcatatttgctctaattctgaacttagaccgtctacgtcc 6611058  T
Q  117 aatcctgaacttatgtgcaagtgcatgtgtgggagcatgagtgacttctaagctaggttttgctccaactctgaataacatactcttgatccgtggagtg 216  Q
    |||||||||| ||||||||||||      |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6611059 aatcctgaacctatgtgcaagtg------tgggattatgagtgacttctaagctaggttttgctccaactctgaataacatactcttgatccgtggagtg 6611152  T
Q  217 cttgctatgtctaatgctgttttgctctccaagttcattgtgttcaaatttattttagtctttaccaacaatcgaactgcctattctaccaagtaattaa 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||          
T  6611153 cttgctatgtctaatgctgttttgctctccaagttcattgtgttcaaatttattttagtctttaccaacaatcgaactgcctgttctaccaagt------ 6611246  T
Q  317 tgaacaatacaattgtcagagatcattaatttagcaactgcgccacctatctaagactctaattttatcattgaaatcaactaaactaactannnnnnna 416  Q
          ||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||       |    
T  6611247 ------atacaattgtcagagatcattaatttaccaactacaccacctatctaagactctaattttatcattgaaatcaactaaactaattatttttgta 6611340  T
Q  417 agaactgcgcaaaacttaaaacgattattaaaatgggacaaagggagtaatctataagttgtcattcat 485  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  6611341 agaactgcgcaaaacttaaaacgattattaaaatgggacagagggggtaatctataagttgtcattcat 6611409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 137 - 355
Target Start/End: Original strand, 17292841 - 17293060
Alignment:
Q  137 gtgcatgtgtgggagcatgagtgacttctaagctaggttttgctccaactctgaataacatactcttgatccgtggagtgcttgctatgtctaatgctgt 236  Q
    ||||| ||||||||||||   ||||||||||||||||||||| |||| | || ||||| ||||||||| ||  | |||||   || ||||||||||||||    
T  17292841 gtgcaagtgtgggagcatccatgacttctaagctaggttttgatccagcactaaataagatactcttgttctctagagtggcggcaatgtctaatgctgt 17292940  T
Q  237 tttgctctccaagttcattgtgttcaaatttattttagtctttaccaacaatcgaactgcctattctaccaagtaattaatgaacaatacaattgtcaga 336  Q
    |||| ||||||| ||| | |  |||||||||||   |||  |||||||||||||||  |||| | ||||  ||||||| |||||| |||||||||| | |    
T  17292941 tttgttctccaaattcttcgccttcaaatttatcccagtacttaccaacaatcgaagcgcctgtgctacatagtaattcatgaacgatacaattgttaaa 17293040  T
Q  337 gatcattaat-ttagcaact 355  Q
    ||||||| || |||||||||    
T  17293041 gatcattcatattagcaact 17293060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 17292709 - 17292754
Alignment:
Q  17 gatagatggcagttgcaacgagagtcgcaattatcaaccaagtgtt 62  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||||    
T  17292709 gataggtggctgttgcaacaagagtcgcaattatcaaccaagtgtt 17292754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 137 - 343
Target Start/End: Complemental strand, 14727627 - 14727421
Alignment:
Q  137 gtgcatgtgtgggagcatgagtgacttctaagctaggttttgctccaactctgaataacatactcttgatccgtggagtgcttgctatgtctaatgctgt 236  Q
    ||||| |||||||||||| || |||||||| |||| ||||||||||||| || ||||| |||||||| |||  ||| ||||||| |||||||||||||||    
T  14727627 gtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctctggggtgcttgttatgtctaatgctgt 14727528  T
Q  237 tttgctctccaagttcattgtgttcaaatttattttagtctttaccaacaatcgaactgcctattctaccaagtaattaatgaacaatacaattgtcaga 336  Q
    |||| ||||||| ||| ||   |||||||||||   |||  ||||||||||| ||| ||||| | ||||||||||||||||||||| |||| |||| |||    
T  14727527 tttgttctccaaattcttttccttcaaatttataccagtacttaccaacaattgaagtgcctgtgctaccaagtaattaatgaacagtacatttgttaga 14727428  T
Q  337 gatcatt 343  Q
     ||||||    
T  14727427 aatcatt 14727421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 137 - 285
Target Start/End: Complemental strand, 28865828 - 28865680
Alignment:
Q  137 gtgcatgtgtgggagcatgagtgacttctaagctaggttttgctccaactctgaataacatactcttgatccgtggagtgcttgctatgtctaatgctgt 236  Q
    ||||| ||||||||||||  |||||||||||||| ||||||| |||| | |||||||| |||||||| |||  |||| ||||||||||||| ||||||||    
T  28865828 gtgcacgtgtgggagcatctgtgacttctaagcttggttttgatccagcactgaataatatactcttaatctctggaatgcttgctatgtccaatgctgt 28865729  T
Q  237 tttgctctccaagttcattgtgttcaaatttattttagtctttaccaac 285  Q
    |||  ||||||| ||| || ||  |||||||||||||||||||||||||    
T  28865728 tttattctccaaattctttttgcgcaaatttattttagtctttaccaac 28865680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 147 - 285
Target Start/End: Complemental strand, 15329721 - 15329583
Alignment:
Q  147 gggagcatgagtgacttctaagctaggttttgctccaactctgaataacatactcttgatccgtggagtgcttgctatgtctaatgctgttttgctctcc 246  Q
    ||||||||  |||||||||||||| |||||||  ||| | |||||||| ||||||||||||  |||| ||||||||||||| |||||||||||  |||||    
T  15329721 gggagcatctgtgacttctaagcttggttttgacccagcactgaataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctcc 15329622  T
Q  247 aagttcattgtgttcaaatttattttagtctttaccaac 285  Q
    || ||| || ||| |||||||||||||||||||||||||    
T  15329621 aaattctttttgtgcaaatttattttagtctttaccaac 15329583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 147 - 285
Target Start/End: Complemental strand, 15510090 - 15509952
Alignment:
Q  147 gggagcatgagtgacttctaagctaggttttgctccaactctgaataacatactcttgatccgtggagtgcttgctatgtctaatgctgttttgctctcc 246  Q
    ||||||||  |||||||||||||| |||||||  ||| | |||||||| ||||||||||||  |||| ||||||||||||| |||||||||||  |||||    
T  15510090 gggagcatctgtgacttctaagcttggttttgacccagcactgaataatatactcttgatctctggaatgcttgctatgtccaatgctgttttattctcc 15509991  T
Q  247 aagttcattgtgttcaaatttattttagtctttaccaac 285  Q
    || ||| || ||| |||||||||||||||||||||||||    
T  15509990 aaattctttttgtgcaaatttattttagtctttaccaac 15509952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 218 - 343
Target Start/End: Complemental strand, 29552589 - 29552461
Alignment:
Q  218 ttgctatgtctaatgctgttttgctctccaagttcattgtgttcaaatttattttagtctttaccaacaatcgaactgcctattctacc---aagtaatt 314  Q
    |||||| ||||||||||||||||  ||| |||||| |||| ||||||||||||||||| |||||||||||||||||||||| |  ||||    | ||||     
T  29552589 ttgctacgtctaatgctgttttgtcctcaaagttctttgtcttcaaatttattttagtatttaccaacaatcgaactgcctgtcataccgattaataatc 29552490  T
Q  315 aatgaacaatacaattgtcagagatcatt 343  Q
    |||||||||| ||||||| ||||||||||    
T  29552489 aatgaacaatgcaattgttagagatcatt 29552461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 156 - 245
Target Start/End: Complemental strand, 30648745 - 30648656
Alignment:
Q  156 agtgacttctaagctaggttttgctccaactctgaataacatactcttgatccgtggagtgcttgctatgtctaatgctgttttgctctc 245  Q
    |||||||||| |||||||||||| |||||| || ||||| ||||||||||||  ||| |||||||||||||||||||| |||||| ||||    
T  30648745 agtgacttctgagctaggttttgttccaacacttaataatatactcttgatctctggcgtgcttgctatgtctaatgcggttttgttctc 30648656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 26089120 - 26089017
Alignment:
Q  144 tgtgggagcatgagtgacttctaagctaggttttgctccaactctgaataacatactcttgatccgtggagtgcttgctatgtctaatgctgttttgctc 243  Q
    ||||||||||| ||||| ||||| |||||||||||||||||  || ||||| |||||||| |    |||||||||||||||||||||||| |||||| ||    
T  26089120 tgtgggagcatcagtgatttctatgctaggttttgctccaaaacttaataatatactcttcacatctggagtgcttgctatgtctaatgcggttttgttc 26089021  T
Q  244 tcca 247  Q
    ||||    
T  26089020 tcca 26089017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 30648896 - 30648837
Alignment:
Q  17 gatagatggcagttgcaacgagagtcgcaattatcaaccaagtgttacggttctcctctg 76  Q
    ||||||||||||| ||||| |||||||||| |||||||||||||||||| | ||||||||    
T  30648896 gatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcctctg 30648837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 26089230 - 26089171
Alignment:
Q  25 gcagttgcaacgagagtcgcaattatcaaccaagtgttacggttctcctctgtcatattt 84  Q
    ||||||||||| |||||||||| |||||||||| ||||||| | |||||| || ||||||    
T  26089230 gcagttgcaacaagagtcgcaactatcaaccaactgttacgttgctcctcggttatattt 26089171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 137 - 248
Target Start/End: Original strand, 26086622 - 26086733
Alignment:
Q  137 gtgcatgtgtgggagcatgagtgacttctaagctaggttttgctccaactctgaataacatactcttgatccgtggagtgcttgctatgtctaatgctgt 236  Q
    ||||| |||||||||||| || |||||| | ||||| |||||||||  | || ||||| ||||||||||||  |||||||||||||||||||||||||||    
T  26086622 gtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatctttggagtgcttgctatgtctaatgctgt 26086721  T
Q  237 tttgctctccaa 248  Q
    |||| |||||||    
T  26086722 tttgttctccaa 26086733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 4819915 - 4819862
Alignment:
Q  23 tggcagttgcaacgagagtcgcaattatcaaccaagtgttacggttctcctctg 76  Q
    ||||||||||||| |||||||||| ||||||||||||||| || | ||||||||    
T  4819915 tggcagttgcaacaagagtcgcaactatcaaccaagtgttgcgttgctcctctg 4819862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 252
Target Start/End: Complemental strand, 4819789 - 4819674
Alignment:
Q  137 gtgcatgtgtgggagcatgagtgacttctaagctaggttttgctccaactctgaataacatactcttgatccgtggagtgcttgctatgtctaatgctgt 236  Q
    ||||| ||||||| ||||  |||||||| |||| ||||||||||||||| ||  |||| ||||||||||||  |  |||   ||| |||||||||| |||    
T  4819789 gtgcaagtgtgggtgcattggtgacttccaagccaggttttgctccaacacttgataatatactcttgatctctctagtcactgccatgtctaatgatgt 4819690  T
Q  237 tttgctctccaagttc 252  Q
    |||| | |||||||||    
T  4819689 tttgttttccaagttc 4819674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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