View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18154_low_3 (Length: 462)
Name: NF18154_low_3
Description: NF18154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18154_low_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 73 - 418
Target Start/End: Original strand, 31538107 - 31538451
Alignment:
| Q |
73 |
agagtttcaatgataaagatcaaaattaaaacccattcttaaatttaatccatatctatcctaagatgaatttgatcatattcatgattattccttcatt |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31538107 |
agagtttcaatgataaagatcaaaattaaaacccattcttaaatttaatccatatctatcctaagatgaatttgaccatattcatgattattccttcatt |
31538206 |
T |
|
| Q |
173 |
aatctcatgtcgccaaaaaatcaaataattctgaataaccaaattgatcaaatgcaagctaaccaaatagagtagatacaccaatgatc--tgtctacca |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31538207 |
aatctcatgtcgccaaaaaatcaaataattctgaataaccaaattgatcaaatgcaagctaagcaaatagagtagatacaccaatgatctgtgtctacca |
31538306 |
T |
|
| Q |
271 |
cttcatacgtacgaaattcataaattgcttagcatgtaccaaactattaattgataaaacactaccaaaatacccaacaatccagggatgacaatatggc |
370 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| | |
|
|
| T |
31538307 |
attca----tacgaaattcataaattgcttagcatgtaccaaactattaattgataaaacactgccaaaatacccaaccatccagggatggcaatatgac |
31538402 |
T |
|
| Q |
371 |
ccaaattcgatgggt-tccgcaataaatacatataataggtagggtaaa |
418 |
Q |
| |
|
||||| ||||||||| ||| |||||||||||||||||||||||| |||| |
|
|
| T |
31538403 |
ccaaactcgatgggtatccacaataaatacatataataggtaggataaa |
31538451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University