View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18155_high_3 (Length: 468)
Name: NF18155_high_3
Description: NF18155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18155_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 9 - 450
Target Start/End: Complemental strand, 26621577 - 26621136
Alignment:
| Q |
9 |
cataggcttgttatgggcattagcatagagtagcataactttatattttctattgtgttcactcggcattcagcaaggttatcagaagttagtttcatag |
108 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
26621577 |
cataggcttgttatgagcattagcatagagtagcataactttatcttttctattgtgttgactcgacattcagcaaggttatcagaagttagtttcatag |
26621478 |
T |
|
| Q |
109 |
attagttagagtttgttagactcgagctataaatatctccttgatcttcagtgtgagttactgcctcaatcaaggatctagatttgtttttaaatttttt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26621477 |
attagttagagtttgttagactcgagctataaatatctccttgatcttcagtgtgagttactacctcaatcaaggatctagatttgtttttaaatttttt |
26621378 |
T |
|
| Q |
209 |
actgctctcgataaactttcagaagaacttgaatcttaccttcttacacttgtttgtggatgtccaatgtgtagtgtttgtgctgctctgagaccgcatc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| || |
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| T |
26621377 |
actgctctcgataaactttcagaagaacttgaatcttaccttcttacactagtttgtggatgtccaatgtgtagcgtttgtgctgctctgcgaccgcgtc |
26621278 |
T |
|
| Q |
309 |
aattaggtgaacgattgctgcttccctagtctgaatcatctggaggtttgttgcctcctcctcgacgcgacttcatcggaatcgaaacggcatctgcaat |
408 |
Q |
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||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
26621277 |
aatgaggtgaatgattgctgcttccctagtctgaatcatctggaggtttgtcgcctcctcctcgacgcaacttcatcagaatcgaaacggcatctgcaat |
26621178 |
T |
|
| Q |
409 |
caccactggagtggagtttcactggttttgttatgctacttc |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
26621177 |
caccactggagtggagtttcactggttttgttatgctacttc |
26621136 |
T |
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