View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18155_high_5 (Length: 367)
Name: NF18155_high_5
Description: NF18155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18155_high_5 |
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| [»] scaffold0242 (2 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 354
Target Start/End: Complemental strand, 29074228 - 29073892
Alignment:
| Q |
20 |
aaatcgaagaagaaatataacgggaaggaaggaaagtacctctgcgatgagatcatccgggagaacc---ggtgaccgagccatagacttggccgattgt |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||| || ||||||||||||||||| || |||||| | ||| ||||||||||||| ||||||||| |
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| T |
29074228 |
aaatcgaagaagaaatataa-gggaaggaaggaaagaacttctgcgatgagatcatcgggaagaaccaccgacgacagagccatagactttgccgattgt |
29074130 |
T |
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| Q |
117 |
atattcaatttcacatgaatccagcagcgcacatctgtttgaaggaaccgcacacatagaaagtattttatctaacacaaagcgtagtagaatagaacac |
216 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
29074129 |
atattcaatttcacatgaatgcagcagcgcacatctgtttgaaggaaccgcacacatagaaagtattttatataacacaaagcgtagtagaaaagaacac |
29074030 |
T |
|
| Q |
217 |
taaagtcttacaaaaacaataaacccaacaagaccaggaaataaataaaaattcaatgataatattaatgtaattattgcaaggattttggaggtaatta |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29074029 |
taaagtcttacaaaaacaataaaccgaacaagaccaggaaataaataaaaattcaatgataatattaatgtaattattgcaaggattttggaggtaatta |
29073930 |
T |
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| Q |
317 |
ttgcatcctgcccatgaatactcaagtcaattcatctc |
354 |
Q |
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|||||||||||| |||||||| ||||| |||||||||| |
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| T |
29073929 |
ttgcatcctgccgatgaatacacaagtaaattcatctc |
29073892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 29105963 - 29105823
Alignment:
| Q |
20 |
aaatcgaagaagaaatataacgggaaggaaggaaagtacctctgcgatgagatcatccgggagaacc---ggtgaccgagccatagacttggccgattgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| | ||| ||||||||||||| ||||||||| |
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| T |
29105963 |
aaatcgaagaagaaatataacgggaaggaaggaaagaacttctgcgatgagatcatcggggagaaccaccgacgacagagccatagactttgccgattgt |
29105864 |
T |
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| Q |
117 |
atattcaatttcacatgaatccagcagcgcacatctgtttg |
157 |
Q |
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||||||| || |||||||| ||||| ||||| |||||||| |
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| T |
29105863 |
atattcatattgacatgaatgcagcaacgcacgtctgtttg |
29105823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 269
Target Start/End: Complemental strand, 29103505 - 29103404
Alignment:
| Q |
168 |
acacatagaaagtattttatctaacacaaagcgtagtagaatagaacactaaagtcttacaaaaacaataaacccaacaagaccaggaaataaataaaaa |
267 |
Q |
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|||||||||||||||| ||| || ||| ||||| |||||||||||||||||||||||||||| ||| ||||| ||||||| ||||||||||||||| |
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| T |
29103505 |
acacatagaaagtattctatttagtgcaaggcgtattagaatagaacactaaagtcttacaaaagcaacaaaccgaacaagatttggaaataaataaaaa |
29103406 |
T |
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| Q |
268 |
tt |
269 |
Q |
| |
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|| |
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|
| T |
29103405 |
tt |
29103404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 29477289 - 29477323
Alignment:
| Q |
39 |
acgggaaggaaggaaagtacctctgcgatgagatc |
73 |
Q |
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| T |
29477289 |
acgggaaggaaggaaagtaactctgcgatgagatc |
29477323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 29480412 - 29480449
Alignment:
| Q |
39 |
acgggaaggaaggaaagtacctctgcgatgagatcatc |
76 |
Q |
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| T |
29480412 |
acgggaaggaaggaaagtaactctgtgatgagatcatc |
29480449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0242
Description:
Target: scaffold0242; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 14622 - 14674
Alignment:
| Q |
21 |
aatcgaagaagaaatataacgggaaggaaggaaagtacctctgcgatgagatc |
73 |
Q |
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||||||| |||| || | ||||||||||||||||||| ||||||||||||||| |
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| T |
14622 |
aatcgaacaagagatttcacgggaaggaaggaaagtaactctgcgatgagatc |
14674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0242; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 23457 - 23509
Alignment:
| Q |
21 |
aatcgaagaagaaatataacgggaaggaaggaaagtacctctgcgatgagatc |
73 |
Q |
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||||||| |||| || | ||||||||||||||||||| ||||||||||||||| |
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| T |
23457 |
aatcgaacaagagatttcacgggaaggaaggaaagtaactctgcgatgagatc |
23509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 55729 - 55789
Alignment:
| Q |
180 |
tattttatctaacacaaagcgtagtagaatagaacactaaagtcttacaaaaacaataaac |
240 |
Q |
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|||| ||||||||||| ||||| ||||||| ||||||| |||||||| ||||||| |||| |
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| T |
55729 |
tattatatctaacacagtgcgtactagaataaaacactagagtcttacgaaaacaacaaac |
55789 |
T |
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