View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18155_low_1 (Length: 495)
Name: NF18155_low_1
Description: NF18155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18155_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 378
Target Start/End: Original strand, 44625064 - 44625429
Alignment:
| Q |
17 |
atttagtaaatgctgtcatagccaaccatgtttgattctaggttgttccagtaatcttttctggggtgaattttatgatagtttttatttgcaaatttat |
116 |
Q |
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| T |
44625064 |
atttagtaaatggtgtcatagccaaccatgtttgattctaggttgttccagtaatcttttctggggtgaattttatgatagtttttatttgcaaatttat |
44625163 |
T |
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| Q |
117 |
tttcgtgctcaattaactgtggccttatgnnnnnnnn----caattgagtactagtatggctgttttccagtgataataattattatgagactacagttg |
212 |
Q |
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| T |
44625164 |
tttcgtgctcaattaactgtggccttatgttttttttttttcaattgagtactagtatggctgttttccagtgataataattattatgagactacagttg |
44625263 |
T |
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| Q |
213 |
tctgttggtaacataaaatgttagttatgttttattgtagagttcaattgctttaccattgtccctctatgctagtattttaattacttcaaattctgca |
312 |
Q |
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| T |
44625264 |
tctgttggtaacataaaatgttagttatgttttattgtagagttcaattgctttaccattgtccctctatgcaagtattttaattacttcaaattctgca |
44625363 |
T |
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| Q |
313 |
gtaaagaatattgataatagttacgatcaactgttttaccattgaaatgtgtccaagaattatact |
378 |
Q |
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| T |
44625364 |
gtaaagaatattgataatagttacgatcaactgttttaccattgaaatgtgtccaagaattatact |
44625429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 218 - 325
Target Start/End: Original strand, 44652388 - 44652495
Alignment:
| Q |
218 |
tggtaacataaaatgttagttatgttttattgtagagttcaattgctttaccattgtccctctatgctagtattttaattacttcaaattctgcagtaaa |
317 |
Q |
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| T |
44652388 |
tggtaacacaatatgttaggtatgttttattgtcgagtccaattgttttacgattgtccctcttagctagtgttttctttacatcaaattctgccatgaa |
44652487 |
T |
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| Q |
318 |
gaatattg |
325 |
Q |
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| T |
44652488 |
gaatattg |
44652495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 213 - 325
Target Start/End: Original strand, 44681299 - 44681411
Alignment:
| Q |
213 |
tctgttggtaacataaaatgttagttatgttttattgtagagttcaattgctttaccattgtccctctatgctagtattttaattacttcaaattctgca |
312 |
Q |
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|||| |||||||| || ||||||| ||||||| ||||| |||| |||||| ||||| ||||||||||| |||||| |||| |||| ||||||||||| |
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| T |
44681299 |
tctgctggtaacacaatatgttaggtatgtttgattgtcgagtccaattgttttacgattgtccctcttagctagtgttttctttacatcaaattctgcc |
44681398 |
T |
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| Q |
313 |
gtaaagaatattg |
325 |
Q |
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| T |
44681399 |
atgaagaatattg |
44681411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 462
Target Start/End: Original strand, 44681727 - 44681787
Alignment:
| Q |
402 |
aagtgtttatatgaaatgatttgaatttcttgcatgataaaattatcatcctcatactttg |
462 |
Q |
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|||||||||| | ||||||||||| ||||||||||||| |||| ||||||||||| |||| |
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| T |
44681727 |
aagtgtttattcggaatgatttgaaattcttgcatgatacaattctcatcctcataatttg |
44681787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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