View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18155_low_10 (Length: 299)
Name: NF18155_low_10
Description: NF18155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18155_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 44733240 - 44732951
Alignment:
| Q |
1 |
catgctaaatagcaagaagccttaaaacaattgctcctcatcttcttggtggtgctcaacaactcgagcttgttgttcctgctggtttgttttgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
44733240 |
catgctaaatagcaagaagccttaaa-caattgctcctcatcttcttggtggtgctcaacaacacgggcttgttgttcctgctggtttgttttgtttttg |
44733142 |
T |
|
| Q |
101 |
caaaccttctccacatgaccaagttggttacaagctctacatttaacttctggcctataccaacaaaacttgtctaaatgagtatcctttttgcaatgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44733141 |
caaaccttctccacatgaccaagttggttacaagctctacatttaactcctggcctataccaacaaaacttgtctaaatgagtatcctttttgcaatgtg |
44733042 |
T |
|
| Q |
201 |
gacacggcggaaacttctttttcccaaaacttttaaagctttgatttttgcctttgttgctggccaaaaaggcaccttcaacatattcttc |
291 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
44733041 |
gacacggcggaaacttcttttccccaaaacttttaaagctttgatttttgcctttgttgctggccaaaaaggcaccttcaacattttcttc |
44732951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 32799403 - 32799114
Alignment:
| Q |
1 |
catgctaaatagcaagaagccttaaaacaattgctcctcatcttcttggtggtgctcaacaactcgagcttgttgttcctgctggtttgttttgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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|
| T |
32799403 |
catgctaaatagcaagaagccttaaa-caattgctcctcatcttcttggtggtgctcaacaactcgggcttcttgttcctgctggtttgttttgtttttg |
32799305 |
T |
|
| Q |
101 |
caaaccttctccacatgaccaagttggttacaagctctacatttaacttctggcctataccaacaaaacttgtctaaatgagtatcctttttgcaatgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32799304 |
caaaccttctccacatgaccaagttggttacaagctctacatttaactcctggcctataccaacaaaacttgtctaaatgagtatcctttttgcaatgtg |
32799205 |
T |
|
| Q |
201 |
gacacggcggaaacttctttttcccaaaacttttaaagctttgatttttgcctttgttgctggccaaaaaggcaccttcaacatattcttc |
291 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
32799204 |
gacacggtggaaacttctttttcccaaaacttttaaagctttgatttttgcctttgttgttggccaaaaaggcaccttcaacattttcttc |
32799114 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 45337656 - 45337367
Alignment:
| Q |
1 |
catgctaaatagcaagaagccttaaaacaattgctcctcatcttcttggtggtgctcaacaactcgagcttgttgttcctgctggtttgttttgtttttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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|
| T |
45337656 |
catgctaaatagcaagaagccttaaa-caattgctcctcatcttcttggtggtgctcaacaactcgggcttcttgttcctgctggtttgttttgtttttg |
45337558 |
T |
|
| Q |
101 |
caaaccttctccacatgaccaagttggttacaagctctacatttaacttctggcctataccaacaaaacttgtctaaatgagtatcctttttgcaatgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45337557 |
caaaccttctccacatgaccaagttggttacaagctctacatttaactcctggcctataccaacaaaacttgtctaaatgagtatcctttttgcaatgtg |
45337458 |
T |
|
| Q |
201 |
gacacggcggaaacttctttttcccaaaacttttaaagctttgatttttgcctttgttgctggccaaaaaggcaccttcaacatattcttc |
291 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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|
| T |
45337457 |
gacacggtggaaacttctttttcccaaaacttttaaagctttgatttttgcctttgttgttggccaaaaaggcaccttcaacattttcttc |
45337367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 13109899 - 13110188
Alignment:
| Q |
1 |
catgctaaatagcaagaagccttaaaacaattgctcctcatcttcttggtggtgctcaacaactcgagcttgttgttcctgctggtttgttttgtttttg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
13109899 |
catgctaaatagcaagaaaccttaaa-caattgctcctcatcttcttggtggtgctcaacaactcgggcttgttgttcctgctggtttgttttgtttttg |
13109997 |
T |
|
| Q |
101 |
caaaccttctccacatgaccaagttggttacaagctctacatttaacttctggcctataccaacaaaacttgtctaaatgagtatcctttttgcaatgtg |
200 |
Q |
| |
|
||||||||||||||||||| |||||| |||||| |||||||||||||| ||||| | |||||||||||||| ||||||||| |||| ||||| ||||||| |
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|
| T |
13109998 |
caaaccttctccacatgactaagttgattacaaactctacatttaactcctggcatgtaccaacaaaacttatctaaatgaatatcttttttacaatgtg |
13110097 |
T |
|
| Q |
201 |
gacacggcggaaacttctttttcccaaaacttttaaagctttgatttttgcctttgttgctggccaaaaaggcaccttcaacatattcttc |
291 |
Q |
| |
|
|||| || | ||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
13110098 |
gacagggtgaaaacttcattttcccaaaacatttaaagctttgatttttgcctttgttgcttgccaaaaaggcaccttcaacattttcttc |
13110188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 5 - 291
Target Start/End: Original strand, 11679163 - 11679448
Alignment:
| Q |
5 |
ctaaatagcaagaagccttaaaacaattgctcctcatcttcttggtggtgctcaacaactcgagcttgttgttcctgctggtttgttttgtttttgcaaa |
104 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||| |||| |||||| ||||| ||||||||||| | ||||||| |||||||||||||||||||||| |
|
|
| T |
11679163 |
ctaaataacaagaagccttaagt-aattgctcctcattttctcggtggttctcaaaaactcgagcttttcgttcctgttggtttgttttgtttttgcaaa |
11679261 |
T |
|
| Q |
105 |
ccttctccacatgaccaagttggttacaagctctacatttaacttctggcctataccaacaaaacttgtctaaatgagtatcctttttgcaatgtggaca |
204 |
Q |
| |
|
||||||||||| |||||| ||| ||||||||||| |||||||||| |||| | |||||| ||| ||| |||||||||||||| || ||||||||| || | |
|
|
| T |
11679262 |
ccttctccacacgaccaaattgattacaagctctgcatttaacttatggcttgtaccaaaaaaccttatctaaatgagtatcattattgcaatgtagata |
11679361 |
T |
|
| Q |
205 |
cggcggaaacttctttttcccaaaacttttaaagctttgatttttgcctttgttgctggccaaaaaggcaccttcaacatattcttc |
291 |
Q |
| |
|
|| |||||||||||||| | |||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
11679362 |
gggtggaaacttctttttactaaaaaatttaaagctttgatttttgcctttgtagctggccaaaaaagcaccttcaacattttcttc |
11679448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 48026166 - 48026447
Alignment:
| Q |
1 |
catgctaaatagcaagaagccttaaaacaattgctcctcatcttcttggtggtgctcaacaactcgagcttgttgttcctgctggtttgttttgtttttg |
100 |
Q |
| |
|
||||||||| ||||| |||||||||| |||||||||||||||||||||||| | ||||| |||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
48026166 |
catgctaaacagcaaaaagccttaaa-caattgctcctcatcttcttggtgctactcaagaactcgggcttgttgttcctactggtttgttttgtttttg |
48026264 |
T |
|
| Q |
101 |
caaaccttctccacatgaccaagttggttacaagctctacatttaacttctggcctataccaacaaaacttgtctaaatgagtatcctttttgcaatgtg |
200 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||||||||||||| ||||| |||| | |||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
48026265 |
caaactttctccaaatgacaaagttggttacaagctctacattaaacttgtggcatgtaccaataaaacttgtctaaatgagtatcttttttgcaatgtg |
48026364 |
T |
|
| Q |
201 |
gacacggcggaaacttctttttcccaaaacttttaaagctttgatttttgcctttgttgctggccaaaaaggcaccttcaaca |
283 |
Q |
| |
|
|||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48026365 |
gacagggtggaaacttctttttcccaaaaattttaaagctttgatttttgcctttgttgccggccaaaaaggcaccttcaaca |
48026447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 8402541 - 8402679
Alignment:
| Q |
5 |
ctaaatagcaagaagccttaaaacaattgctcctcatcttcttggtggtgctcaacaactcgagcttgttgttcctgctggtttgttttgtttttgcaaa |
104 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8402541 |
ctaaatagcaagaagccataaa-caattgctcctcatcttcttggtggtgctcaacaactcgggcttgttgttcctactggtttgttttgtttttgcaaa |
8402639 |
T |
|
| Q |
105 |
ccttctccacatgaccaagttggttacaagctctacattt |
144 |
Q |
| |
|
| ||||| | |||| ||||||||||||||||||||||||| |
|
|
| T |
8402640 |
cattctctaaatgaacaagttggttacaagctctacattt |
8402679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 162 - 284
Target Start/End: Original strand, 8404953 - 8405076
Alignment:
| Q |
162 |
aacaaaacttgtctaaatgag--tatcctttttgcaatgtggacacggcggaaacttctttttcccaaaacttttaaagctttgatttttgcctttgttg |
259 |
Q |
| |
|
|||||||||| |||||||||| |||| |||||||||||||| || || ||||||||||||| | |||||||||||||||||| |||||||||||||||| |
|
|
| T |
8404953 |
aacaaaacttatctaaatgagagtatcttttttgcaatgtgggcagggtggaaacttctttt-ctcaaaacttttaaagctttcatttttgcctttgttg |
8405051 |
T |
|
| Q |
260 |
ctggccaaaaaggcaccttcaacat |
284 |
Q |
| |
|
||||||||||| |||||| |||||| |
|
|
| T |
8405052 |
ctggccaaaaaagcacctccaacat |
8405076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 24221129 - 24221248
Alignment:
| Q |
25 |
aaacaattgctcctcatcttcttggtggtgctcaacaactcgagcttgttgttcctgctggtttgttttgtttttgcaaaccttctccacatgaccaagt |
124 |
Q |
| |
|
||||||||| ||||| ||||||||||| |||||||||||| || ||||| ||||| |||||| |||||||||||||||||||||||| |||| ||||| |
|
|
| T |
24221129 |
aaacaattgttcctcctcttcttggtgcggctcaacaactctaggttgttattcctattggtttcttttgtttttgcaaaccttctccaaatgatcaagt |
24221228 |
T |
|
| Q |
125 |
tggttacaagctctacattt |
144 |
Q |
| |
|
|| ||| | |||||||||| |
|
|
| T |
24221229 |
tgattaaagactctacattt |
24221248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 290
Target Start/End: Original strand, 24221965 - 24222078
Alignment:
| Q |
176 |
aaatgagtatcctttttgcaatgtggacacggcggaaacttctttttcccaaaacttttaaagctttgatttttgcctttgttgctggccaaaaaggcac |
275 |
Q |
| |
|
|||| |||||| |||||||||||||| | |||| ||||||||||||| ||||||| || ||| |||| ||||| |||||||||||| |||||| |||| |
|
|
| T |
24221965 |
aaataagtatcttttttgcaatgtggg-agggcgaaaacttctttttctcaaaactattgaagttttgccttttgtctttgttgctggtcaaaaaagcac |
24222063 |
T |
|
| Q |
276 |
cttcaacatattctt |
290 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
24222064 |
tttcaacattttctt |
24222078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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