View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18155_low_13 (Length: 241)
Name: NF18155_low_13
Description: NF18155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18155_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 37894220 - 37894001
Alignment:
| Q |
8 |
gacatcatcacacaattgagttgtaattaatcaaattacaactcttggtttttgtgtcctcctgnnnnnnntgaattaattacattcttaacatagagac |
107 |
Q |
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| T |
37894220 |
gacatcataacacaattgagttgtaattaatcaaattacaactcttggtttttgtgtcctcctgaaaaaaatgaattaattacattcttaacatagagac |
37894121 |
T |
|
| Q |
108 |
caaacagcaagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37894120 |
caaacagcaagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttg |
37894021 |
T |
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| Q |
208 |
tctctgtcttgaaaccattt |
227 |
Q |
| |
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|||||||||||||||||||| |
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| T |
37894020 |
tctctgtcttgaaaccattt |
37894001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 227
Target Start/End: Complemental strand, 37189320 - 37189098
Alignment:
| Q |
8 |
gacatcatcacacaattgagttgtaattaatcaaattacaactcttggtttttgtgtcctcctgnnnnnnn----tgaattaattacattcttaacatag |
103 |
Q |
| |
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||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37189320 |
gacatgataacacaattgagttgaaattaatcaa-ttacaactcttggtttttgtgtcctcctcaagaaaaaaaatgaattaattacattcttaacatag |
37189222 |
T |
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| Q |
104 |
agaccaaacagcaagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatatt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189221 |
agaccaaacagcaagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatatt |
37189122 |
T |
|
| Q |
204 |
cttgtctctgtcttgaaaccattt |
227 |
Q |
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|||||||||||||||||||||||| |
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| T |
37189121 |
cttgtctctgtcttgaaaccattt |
37189098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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