View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18155_low_2 (Length: 479)
Name: NF18155_low_2
Description: NF18155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18155_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 150 - 462
Target Start/End: Original strand, 36797761 - 36798078
Alignment:
| Q |
150 |
aaatattacactgacatcctagttttcttttttatctttctttaatact-gaaataaaacaatggtgttaaaactaattgaaaa-cttaccactcca--- |
244 |
Q |
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| T |
36797761 |
aaatattaaactgacatcatatttttcttttttatctttccttactactcgaaataaaataatggtattaaaactaaatgaaaaacttaccactccacca |
36797860 |
T |
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| Q |
245 |
tataaatagccaattgcatatccccctggtatacacatgtaaaatatagaaagccacactgttttttgatacatacaccaatataagaaggttagaacca |
344 |
Q |
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| T |
36797861 |
tatacatagccaattgcatatccccctggtatacacatgtaaaatatagaaagccacactgttttctgatacatacaccaatataagaaggttagaacca |
36797960 |
T |
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| Q |
345 |
taaagaaaataggcagcaaacgcaataccatataatataaaatattccaactgtcaagaaggtaagaaaaaatcagctagtgttgccagattatatctac |
444 |
Q |
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| T |
36797961 |
taaagaaaataggcagcaattccaataccatataatataaaatattccaactgtcaagaaggtaagaaaacatcagtcagtgttgacagattatatctgc |
36798060 |
T |
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| Q |
445 |
aaaccattgaaatgttga |
462 |
Q |
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| T |
36798061 |
aaaccattgaaatgttga |
36798078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 27263161 - 27263306
Alignment:
| Q |
5 |
gagcaatgagtgataaattggattactgccttggtatccagcatacaaagtaaagctatgaaactattataaggccaacttttgataaatctaaaccgat |
104 |
Q |
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| T |
27263161 |
gagcaatgagtgataaattggattactgccttggtatccagcatacaaagtaaagctatgaaactattataaggccaacttttgataaatctaaaccgat |
27263260 |
T |
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| Q |
105 |
ggtgtctatacaaagtgcttacctatacgcaggcgatgaaactata |
150 |
Q |
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| T |
27263261 |
ggtgtctatacaaagtgcttacctatacgcaggtgatgaaactata |
27263306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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