View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18155_low_3 (Length: 468)
Name: NF18155_low_3
Description: NF18155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18155_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 9 - 450
Target Start/End: Complemental strand, 26621577 - 26621136
Alignment:
| Q |
9 |
cataggcttgttatgggcattagcatagagtagcataactttatattttctattgtgttcactcggcattcagcaaggttatcagaagttagtttcatag |
108 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26621577 |
cataggcttgttatgagcattagcatagagtagcataactttatcttttctattgtgttgactcgacattcagcaaggttatcagaagttagtttcatag |
26621478 |
T |
|
| Q |
109 |
attagttagagtttgttagactcgagctataaatatctccttgatcttcagtgtgagttactgcctcaatcaaggatctagatttgtttttaaatttttt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26621477 |
attagttagagtttgttagactcgagctataaatatctccttgatcttcagtgtgagttactacctcaatcaaggatctagatttgtttttaaatttttt |
26621378 |
T |
|
| Q |
209 |
actgctctcgataaactttcagaagaacttgaatcttaccttcttacacttgtttgtggatgtccaatgtgtagtgtttgtgctgctctgagaccgcatc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||| || |
|
|
| T |
26621377 |
actgctctcgataaactttcagaagaacttgaatcttaccttcttacactagtttgtggatgtccaatgtgtagcgtttgtgctgctctgcgaccgcgtc |
26621278 |
T |
|
| Q |
309 |
aattaggtgaacgattgctgcttccctagtctgaatcatctggaggtttgttgcctcctcctcgacgcgacttcatcggaatcgaaacggcatctgcaat |
408 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
26621277 |
aatgaggtgaatgattgctgcttccctagtctgaatcatctggaggtttgtcgcctcctcctcgacgcaacttcatcagaatcgaaacggcatctgcaat |
26621178 |
T |
|
| Q |
409 |
caccactggagtggagtttcactggttttgttatgctacttc |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26621177 |
caccactggagtggagtttcactggttttgttatgctacttc |
26621136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University