View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18155_low_5 (Length: 411)
Name: NF18155_low_5
Description: NF18155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18155_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 89 - 233
Target Start/End: Complemental strand, 36084124 - 36083980
Alignment:
| Q |
89 |
gttttcctccaaaaacaaatttaattaaaaacaaattgttaataaatgtgtatatgtgtgtg-gggtgaaattctttgtttcgtttttcgtggtatatga |
187 |
Q |
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| T |
36084124 |
gttttcctccaaaaacaaatttaattaaaaa-aaatagttaataaatgtgtatgtgtgtgtgtgggtgaaattctttgtttcgtttttcgtggtatatga |
36084026 |
T |
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| Q |
188 |
cgttgttttatttagccactatgttaattgaaaaaagataataatt |
233 |
Q |
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| T |
36084025 |
cgttgttttttttaaccactatgttaattgaaaaaagataataatt |
36083980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 74 - 228
Target Start/End: Complemental strand, 36088921 - 36088769
Alignment:
| Q |
74 |
cactttttaccccatgttttcctccaaaaacaaatttaattaaaaacaaattgttaataaatgtgtatatgtgtgtggggtgaaattctttgtttcgttt |
173 |
Q |
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| T |
36088921 |
cactttttaccccaagttttcctacaaaaacaaatttaattaaata-aaattgttaataaatgtgtatgtatgtgtggg-tgaaattctttgtttcgttt |
36088824 |
T |
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| Q |
174 |
ttcgtggtatatgacgttgttttatttagccactatgttaattgaaaaaagataa |
228 |
Q |
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| T |
36088823 |
ttattggtatatgacgttgttttttttagccactatgttaattgaaaaaaaataa |
36088769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 36082843 - 36082763
Alignment:
| Q |
292 |
tgaacttttaaagttagttgcaacaaggtatatattttagggggataaaacaatatttttcaatctaaataaattaaggag |
372 |
Q |
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| T |
36082843 |
tgaacttttaaagttagttgcaacaagatatatattttagggggataaaacaatatttttcaatctaaataaattaaggag |
36082763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 36087618 - 36087538
Alignment:
| Q |
292 |
tgaacttttaaagttagttgcaacaaggtatatattttagggggataaaacaatatttttcaatctaaataaattaaggag |
372 |
Q |
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| T |
36087618 |
tgaacttttaaagttagttgcaacaagatatatattttagggggataaaacaatatttttcaatctaaataaattagggag |
36087538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 36091304 - 36091150
Alignment:
| Q |
72 |
atcactttttaccccatgttttcctccaaaaacaaatttaattaa---aaacaaattgttaataaatgtgtatatgtgtgtggggtgaaattctttgttt |
168 |
Q |
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| T |
36091304 |
atcactttttaccccaagttttcctctaaaaacaaatttaatttaattaaaaaaattgttaatgaatgtg--tgtgtgtgggtggtgaaattctttgttt |
36091207 |
T |
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| Q |
169 |
cgtttttcgtggtatat--gacgttgttttatttagccactatgttaattgaaaaaa |
223 |
Q |
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| T |
36091206 |
ggtttttcgtggtatatgcgttgttgttttttttaatcactatgttaattgaaaaaa |
36091150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 36093725 - 36093664
Alignment:
| Q |
286 |
aactaatgaacttttaaagttagttgcaacaaggtatatattttagggggataaaacaatat |
347 |
Q |
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| T |
36093725 |
aactaatgaacttataaagttagttgcaacaagatatatattttaggggtataaaacaatat |
36093664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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