View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18155_low_8 (Length: 352)
Name: NF18155_low_8
Description: NF18155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18155_low_8 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 171 - 352
Target Start/End: Original strand, 53586491 - 53586672
Alignment:
| Q |
171 |
ggaaattacatccagttcaaaagtaacaccaagttaaactcaaaatagaataaaattatagaatttttattttaattaagataccttaacttcacgacga |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53586491 |
ggaaattacatccagttcaaaagtaacaccaagttaaactcaaaatagaataaaattatagaatttttattttaattaagataccttaacttcacgacga |
53586590 |
T |
|
| Q |
271 |
cctcaagttaatttgaattatcttcttttggttttctgcagagaatcatgtgcataggagagaaaattccagaatcaccccc |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53586591 |
cctcaagttaatttgaattatcttcttttggttttctgcagagaatcatgtgcataggagagaaaattccagaatcaccccc |
53586672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 53586395 - 53586437
Alignment:
| Q |
77 |
gactaaaatagaatccatacagcaattgctcctgaagcatagg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53586395 |
gactaaaatagaatccatacagcaattgctcctgaagcatagg |
53586437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University