View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_high_12 (Length: 539)
Name: NF18156_high_12
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 8 - 523
Target Start/End: Original strand, 43132148 - 43132662
Alignment:
| Q |
8 |
acatcatcatcatagtaaattatatggtatcatgacnnnnnnnnacctttgttttgtagggaggccttgctaagagttggtcaacattttgtgattgtta |
107 |
Q |
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| T |
43132148 |
acatcatcatcatagtaaattatttggtatcatgacttttttt-atctttgttttgtagggaggccttgctaagagtaggtcaacattttgtgattgtta |
43132246 |
T |
|
| Q |
108 |
aaacacttccaataagtatctactattaccgtttcattgtagatggacaatggacacatgctcctgagtttccatcagatcttgatgattctggttatgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43132247 |
aaacacttccaataagtatctactattaccgtttcattgtagatggacaatggacacatgctcctgagtttccatcagatcttgatgattctggttatgt |
43132346 |
T |
|
| Q |
208 |
ctacaatatattggatttgcaggtaattttttgcttagtaacatgatcatcaattcaagttagtatctatcgcgtttatagtaacatcgatattatactg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43132347 |
ctacaatatattggatttgcaggtaattttttgcttagtaacatgatcatcaattcaagttagtatctatcgcgtttatagtaacatccatattatactg |
43132446 |
T |
|
| Q |
308 |
ttttaggaatgtgtttgcttatgcttgacggagaatatgtactcggttctaaatcatcttgtccaatatagtctagcgttcaaatcctgagaaattaacg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43132447 |
ttttaggaatgtgtttgcttatgcttgacggagaatatgtactcggttctaaatcatcttgtccaatatagtctagcgttcaaatcctgagaaattaacg |
43132546 |
T |
|
| Q |
408 |
tacccactaacttagtaatatttacctatccatcnnnnnnnnnnnnnnnnttcagtttaatatatacactaaaattccgtgattaacacttgtttctcgc |
507 |
Q |
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|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
43132547 |
tatccactaacttagtaatatttacctatccatcaaaaataaataaaaaattcagtttaatatatacactaaaattacctgattaacacttgtttctcgc |
43132646 |
T |
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| Q |
508 |
gctccgatgtgttata |
523 |
Q |
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|||||||||||||||| |
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| T |
43132647 |
gctccgatgtgttata |
43132662 |
T |
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