View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_high_13 (Length: 539)
Name: NF18156_high_13
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-172; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 39556931 - 39556621
Alignment:
| Q |
18 |
aactagttagtggaaccatatacatgtaacaatttgtggaaagcaaaattaacaacagaaagagaatgtgttacctttcatgaatccactgcattccatt |
117 |
Q |
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| T |
39556931 |
aactagttagtggaaccatatacatgtaacaatttgtggaaagcaaaattaacaacagaaagagaatgtgttacctttcatgaatccactgcattccatt |
39556832 |
T |
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| Q |
118 |
ccatatcctgcaacaagaaatcagaactatgttaaataattatattacacaacaccaagtaagagatatgtatagagaaagagtgaaaaagggaaaagag |
217 |
Q |
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| T |
39556831 |
ccatatcctgcaacaagaaatcagaactatgttaaataattatattacacaacaccaagtaagagatatgtatagagaaagagtgaaaaagggaaaagag |
39556732 |
T |
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| Q |
218 |
atagaattgatcaccatggcataggaaaacaagagccttgggagaagaagaaataggcaaccacttgcatgtgaagagtcgcattccccttgagttcttc |
317 |
Q |
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| T |
39556731 |
atagaaatgatcaccatggcataggaaaacaagagccttgggagaagaagaaataggcaaccacttgcatgtgaagagtcgcattccccttgagttcttc |
39556632 |
T |
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| Q |
318 |
caatatccctg |
328 |
Q |
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| T |
39556631 |
caatatccctg |
39556621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 402 - 535
Target Start/End: Complemental strand, 39556552 - 39556419
Alignment:
| Q |
402 |
gaagaattttgaacgtgaaagaaaaaacttacttcttggtattcatatctcaaatccatgactttggtggtgaatgttatttgtgagtatgcaacttggt |
501 |
Q |
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| T |
39556552 |
gaagaattttgaacgtgaaagaaaaaacatacttcttggtattcatatctcaaatccatgactttggtggtgaatgttatttgtgagtatgcaaattggt |
39556453 |
T |
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| Q |
502 |
gatgagaagagtagtgtaaagatagatattatgg |
535 |
Q |
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| T |
39556452 |
gatgagaagagtagtgtaaagatagatattatgg |
39556419 |
T |
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