View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18156_high_2 (Length: 758)

Name: NF18156_high_2
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18156_high_2
NF18156_high_2
[»] chr5 (1 HSPs)
chr5 (15-743)||(1444534-1445262)


Alignment Details
Target: chr5 (Bit Score: 717; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 15 - 743
Target Start/End: Complemental strand, 1445262 - 1444534
Alignment:
Q  15 cagagaacaccaaccttattgaactcagatcaaactccgccaccgacggactcttcgccaacgccaaaaccaacggcggaacaaccatcgccaccgtaac 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1445262 cagacaacaccaaccttattgaactcagatcaaactccgccaccgacggactcttcgccaacgccaaaaccaacggcggaacaaccatcgccaccgtaac 1445163  T
Q  115 cttatgtttttgtataagaccaagcaaagtcccaatctcaaatttatgcatcaacaaaaccccacttcctgctctcagtgcacacaataacacactgttg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1445162 cttatgtttttgtataagaccaagcaaagtcccaatctcaaatttatgcatcaacaaaaccccacttcctgctctcagtgcacacaataacacactgttg 1445063  T
Q  215 agagaaaatatatgaaacaatggaagaacacaaagaagaacatcttctgttgttaaatgtagatttggattctctccatccacttgttgtgccacacttg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1445062 agagaaaatatatgaaacaatggaagaacacaaagaagaacatcttctgttgttaaatgtagatttggattctctccatccacttgttgtgccacacttg 1444963  T
Q  315 ttgttaaactcttgtgtgttagaatcactcctttaggtaatcctgttgttcctgaagaaaatggtagcgccaccgcgtcttctggatcgatctccactac 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1444962 ttgttaaactcttgtgtgttagaatcactcctttaggtaatcctgttgttcctgaagaaaatggtagcgccaccgcgtcttctggatcgatctccactac 1444863  T
Q  415 cggaatatcctcttcgttcgactcagaaatcatcgaaaaatgtaaacaattcagcggtggttcgtcggttgttatcaccttaaagtcaaattctgcacca 514  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1444862 cggaatatcctcttcgttcgactcagaaatcaccgaaaaatgtaaacaattcagcggtggttcgtcggttgttatcaccttaaagtcaaattctgcacca 1444763  T
Q  515 acctgatccttttgacggagtttatcaacgtacattgcttgtgtaataatgagttttgtttcagaagcttttatttgtttgaagatttcagcgctggtgt 614  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1444762 acctgatccttttgacggagtttatcaacgtacattgcttgtgtaataatgagttttgtttcagaagcttttatttgtttgaagatttcagcgctggtgt 1444663  T
Q  615 agaaaggattggcggtggttgcgaccgcgccaatcatggaagcagcgatgaaagagagaacaaattcagctgagttttgtagaagaatcatgattacatc 714  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1444662 agaaaggattggcggtggttgcgaccgcaccaatcatggaagcagcgatgaaagagagaacaaattcagctgagttttgtagaagaatcatgattacatc 1444563  T
Q  715 gcctttctggatgcctaatttggacaaac 743  Q
    |||||||||||||||||||||||||||||    
T  1444562 gcctttctggatgcctaatttggacaaac 1444534  T

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