View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_high_23 (Length: 440)
Name: NF18156_high_23
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 6e-84; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 3 - 195
Target Start/End: Complemental strand, 7352166 - 7351973
Alignment:
| Q |
3 |
acgacgtaagaatcaagttctcaatatttggtcactacagcactaaaggatcagtcgagttgtatgctttgtaggtaagattttt-gaagatattcttat |
101 |
Q |
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| T |
7352166 |
acgacgtaagaatcacgttctcaatatttggtcactacagtactaaaggatcagtcgagttatacgctttgttggtaagattttttgaagatattcttat |
7352067 |
T |
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| Q |
102 |
aagtttgatttggctcaggaccgatgaagaaatcatagcttgcatgaagtaaccaaataaaagatgaagaagttagtttgtctcatccgtgatc |
195 |
Q |
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| T |
7352066 |
aagtttgatttggctcaggaccgatgaagaaatcatagcttgcacgaagtaaccaaataaaagatgaagaagttagtttgtcccatccgtgatc |
7351973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 318 - 426
Target Start/End: Complemental strand, 7351887 - 7351779
Alignment:
| Q |
318 |
acctctgcatatgttcttgtttctcactatataacgattgttaactacgttacaactacaaatgttaagtgtcgtcggataacgagtaaacgaccgttaa |
417 |
Q |
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| T |
7351887 |
acctctgcatatgttcttgtttctcactatataacgattgttaactacgttacaattacaaatgttaagtgtcgtcggataatgagtaaacgaccgttaa |
7351788 |
T |
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| Q |
418 |
ccatcgttt |
426 |
Q |
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| T |
7351787 |
ccatcgttt |
7351779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 7351916 - 7351875
Alignment:
| Q |
252 |
cttgcatggatatcgaatggtctttgaatacctctgcatatg |
293 |
Q |
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| T |
7351916 |
cttgcatggatatcaaacggtctttgaatacctctgcatatg |
7351875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 29552000 - 29552061
Alignment:
| Q |
3 |
acgacgtaagaatcaagttctcaatatttggtcactacagcactaaaggatcagtcgagttg |
64 |
Q |
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||||||| |||| || |||||| ||||||||||| ||||| ||||||||| || |||||||| |
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| T |
29552000 |
acgacgtgagaaccatgttctcgatatttggtcagtacagtactaaaggaacaatcgagttg |
29552061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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