View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18156_high_24 (Length: 419)

Name: NF18156_high_24
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18156_high_24
NF18156_high_24
[»] chr1 (2 HSPs)
chr1 (17-406)||(2445246-2445635)
chr1 (149-210)||(16567298-16567359)
[»] chr5 (3 HSPs)
chr5 (152-204)||(29587687-29587739)
chr5 (151-188)||(28735829-28735866)
chr5 (153-193)||(34166131-34166171)
[»] chr8 (2 HSPs)
chr8 (155-193)||(41953177-41953215)
chr8 (158-194)||(13824373-13824409)
[»] chr6 (3 HSPs)
chr6 (153-191)||(10338617-10338655)
chr6 (158-211)||(1960322-1960375)
chr6 (152-193)||(2468484-2468525)
[»] chr4 (2 HSPs)
chr4 (158-192)||(51238012-51238046)
chr4 (152-193)||(27131684-27131725)
[»] chr7 (1 HSPs)
chr7 (158-186)||(6969094-6969122)


Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 406
Target Start/End: Complemental strand, 2445635 - 2445246
Alignment:
Q  17 tattttatcatgttatatgcccattctatctacactgccgtgccttatcttgttttttctgctgtggaggctagatgcaatgagaggatcgaagcatgtc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2445635 tattttatcatgttatatgcccattctatctacactgccgtgccttatcttgttttttctgctgtggaggccagatgcaatgagaggatcgaagcatgtc 2445536  T
Q  117 ctgtctatgacacaaacacttacacacaaacgcatgtaatcatttaagaaaatggaagtgattgaatgtaatcacatttgccaatgtcgtgttgaacacc 216  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2445535 ctgtctacgacacaaacacttacacacaaacgcatgtaatcatttaagaaaatggaagtgattgaatgtaatcacatttgccaatgtcgtgttgaacacc 2445436  T
Q  217 tgcaaacagcatatatgtctttaaactaaagcattgatgctacattgtgtcgtgctcgtgcctatatcatataagatttaagaatccaactaatttttac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2445435 tgcaaacagcatatatgtctttaaactaaagcattgatgctacattgtgtcgtgctcgtgcctatatcatataagatttaagaatccaactaatttttac 2445336  T
Q  317 tcaaactgtgcaatcatttaagaattcaaataggtcccacaagtaaccttacacattactttttcaattgatcatatagtagtataatgt 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2445335 tcaaactgtgcaatcatttaagaattcaaataggtcccacaagtaaccttacacattactttttcaattgatcatatagtagtataatgt 2445246  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 16567298 - 16567359
Alignment:
Q  149 catgtaatcatttaagaaaatggaagtgattgaatgtaatcacatttgccaatgtcgtgttg 210  Q
    |||| ||| |||||||||||||||| ||||||||||||| ||||| || || | ||||||||    
T  16567298 catgcaataatttaagaaaatggaaatgattgaatgtaaccacatgtgtcagtatcgtgttg 16567359  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 29587687 - 29587739
Alignment:
Q  152 gtaatcatttaagaaaatggaagtgattgaatgtaatcacatttgccaatgtc 204  Q
    ||||| |||||||||||||||||||||| ||||||| ||||| || |||||||    
T  29587687 gtaataatttaagaaaatggaagtgattaaatgtaaccacatatgtcaatgtc 29587739  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 28735866 - 28735829
Alignment:
Q  151 tgtaatcatttaagaaaatggaagtgattgaatgtaat 188  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  28735866 tgtaataatttaagaaaatagaagtgattgaatgtaat 28735829  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 34166131 - 34166171
Alignment:
Q  153 taatcatttaagaaaatggaagtgattgaatgtaatcacat 193  Q
    |||| ||||||||||||| || |||||||||||||||||||    
T  34166131 taataatttaagaaaatgaaattgattgaatgtaatcacat 34166171  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 41953215 - 41953177
Alignment:
Q  155 atcatttaagaaaatggaagtgattgaatgtaatcacat 193  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  41953215 atcatataagaaaatgaaagtgattgaatgtaatcacat 41953177  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 13824373 - 13824409
Alignment:
Q  158 atttaagaaaatggaagtgattgaatgtaatcacatt 194  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  13824373 atttaagaaagtggaagtgattgaatgtaatcgcatt 13824409  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 10338617 - 10338655
Alignment:
Q  153 taatcatttaagaaaatggaagtgattgaatgtaatcac 191  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  10338617 taataatttaagaaaatagaagtgattgaatgtaatcac 10338655  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 211
Target Start/End: Complemental strand, 1960375 - 1960322
Alignment:
Q  158 atttaagaaaatggaagtgattgaatgtaatcacatttgccaatgtcgtgttga 211  Q
    ||||||||||||| |||||||||||||||||  ||| ||||  |||||||||||    
T  1960375 atttaagaaaatgaaagtgattgaatgtaatttcatgtgccggtgtcgtgttga 1960322  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 2468525 - 2468484
Alignment:
Q  152 gtaatcatttaagaaaatggaagtgattgaatgtaatcacat 193  Q
    ||||| |||||||||||||||||| ||||||||||| |||||    
T  2468525 gtaataatttaagaaaatggaagtaattgaatgtaaccacat 2468484  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 192
Target Start/End: Complemental strand, 51238046 - 51238012
Alignment:
Q  158 atttaagaaaatggaagtgattgaatgtaatcaca 192  Q
    |||||||||||||||||||||||||||||| ||||    
T  51238046 atttaagaaaatggaagtgattgaatgtaagcaca 51238012  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 193
Target Start/End: Complemental strand, 27131725 - 27131684
Alignment:
Q  152 gtaatcatttaagaaaatggaagtgattgaatgtaatcacat 193  Q
    ||||| |||||||||||||||||| ||||||||||| |||||    
T  27131725 gtaataatttaagaaaatggaagtaattgaatgtaaccacat 27131684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 186
Target Start/End: Complemental strand, 6969122 - 6969094
Alignment:
Q  158 atttaagaaaatggaagtgattgaatgta 186  Q
    |||||||||||||||||||||||||||||    
T  6969122 atttaagaaaatggaagtgattgaatgta 6969094  T

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