View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18156_high_27 (Length: 399)
Name: NF18156_high_27
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_high_27 |
 | |
|
| [»] scaffold1079 (1 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 15 - 392
Target Start/End: Original strand, 16899233 - 16899610
Alignment:
| Q |
15 |
atcaaacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttagttaagttcttttctaagaggt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16899233 |
atcaaacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttatttaagttcttttctaagaggt |
16899332 |
T |
|
| Q |
115 |
ggaatagaataacccggttgaagcgtaatgatcatacgtttgtaacgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcgat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16899333 |
agaatagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcgcattcttctaccatttattgggagtcgat |
16899432 |
T |
|
| Q |
215 |
gactattcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899433 |
gactattcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgatt |
16899532 |
T |
|
| Q |
315 |
ttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttccctatg |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899533 |
ttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttccctatg |
16899610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 15 - 392
Target Start/End: Original strand, 18347748 - 18348125
Alignment:
| Q |
15 |
atcaaacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttagttaagttcttttctaagaggt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18347748 |
atcaaacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttatttaagttcttttctaagaggt |
18347847 |
T |
|
| Q |
115 |
ggaatagaataacccggttgaagcgtaatgatcatacgtttgtaacgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcgat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18347848 |
agaatagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcgat |
18347947 |
T |
|
| Q |
215 |
gactattcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18347948 |
gactattcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgatt |
18348047 |
T |
|
| Q |
315 |
ttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttccctatg |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18348048 |
ttttcccaataaccgaatacttttgtctgtaaatattgcattttttattccattcataaatctattttcttccctatg |
18348125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 15 - 392
Target Start/End: Complemental strand, 13236743 - 13236366
Alignment:
| Q |
15 |
atcaaacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttagttaagttcttttctaagaggt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13236743 |
atcaaacgatttcgtgtgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttatttaagttcttttctaagaggt |
13236644 |
T |
|
| Q |
115 |
ggaatagaataacccggttgaagcgtaatgatcatacgtttgtaacgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcgat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236643 |
agaatagaataacccggttgaagcgtaatgatcatacgtttgtaatgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcgat |
13236544 |
T |
|
| Q |
215 |
gactattcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgatt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236543 |
gactattcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgatt |
13236444 |
T |
|
| Q |
315 |
ttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttccctatg |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13236443 |
ttttcccaataaccgaatacttttgtctgtaaatattgcattttttattccattcataaatctattttcttccctatg |
13236366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 31 - 392
Target Start/End: Original strand, 254 - 617
Alignment:
| Q |
31 |
tgcgggtgctcgggatagaagttttgtataaatgtatcgccatgctattaagtgtatttttagttaagttcttttc----taagaggtggaatagaataa |
126 |
Q |
| |
|
|||| |||| |||| |||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |||||||||||||||||||| |
|
|
| T |
254 |
tgcgtgtgcccggggtagaagttttgtataaatgtatcgccatgctattaagt--attttgatttaagttcttttcgttgtaagaggtggaatagaataa |
351 |
T |
|
| Q |
127 |
cccggttgaagcgtaatgatcatacgtttgtaacgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcgatgactattcatag |
226 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
352 |
cccggttgaagcgtaatgatcatacgcctgtaatgcattgtatgtcccataataggtcccattcttctaccctttcgggggagtcgatgactattcatag |
451 |
T |
|
| Q |
227 |
ctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattgattttttcccaataa |
326 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |
|
|
| T |
452 |
ctattaccttgacaccaaagaagagttcgacccaatgctttatttctgtcctagttgatcctgattcgacattagaagtatattgatttttcaccactaa |
551 |
T |
|
| Q |
327 |
ccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttccctatg |
392 |
Q |
| |
|
|||||||||||||||||||| || | |||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
552 |
ccgaatacttttgtctgtaactactatatatttgattccatccataaatctattttcttccctatg |
617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 192 - 392
Target Start/End: Original strand, 10403965 - 10404169
Alignment:
| Q |
192 |
tctaccctttattgggagtcgatgactattcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctg-- |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10403965 |
tctaccctttattgggagtcgatgactattcatagctattaccttgacaccaaataagagttcgacccaatgttttatttctgtcctagttgatactgat |
10404064 |
T |
|
| Q |
290 |
--attcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttcc |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10404065 |
taattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtttgtaaatattatatattttattccattcataaatctattttcttcc |
10404164 |
T |
|
| Q |
388 |
ctatg |
392 |
Q |
| |
|
||||| |
|
|
| T |
10404165 |
ctatg |
10404169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 267 - 392
Target Start/End: Complemental strand, 6352464 - 6352341
Alignment:
| Q |
267 |
tatttctgtcctagttgatcctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattcca |
366 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6352464 |
tatttctgtcctagttgatcct-attcgacattaaaagtatattgattttttcccaataat-gaatacttttgtctgtaaatattacatattttattcca |
6352367 |
T |
|
| Q |
367 |
ttcataaatctattttcttccctatg |
392 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
6352366 |
ttcataaatctattttcttccctatg |
6352341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 187 - 392
Target Start/End: Complemental strand, 42203482 - 42203278
Alignment:
| Q |
187 |
attcttctaccctttattgggagtcgatgactattcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatc |
286 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42203482 |
attcttttatcctttattgggagtcgatgactattcatagctattaccttgacatcaaagaagagttcgacccaatgttttatttctatcctagttgatc |
42203383 |
T |
|
| Q |
287 |
ctgattcgacattaaaagtatattgattttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatctattttcttc |
386 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
42203382 |
ctgattcgacattaaaagtatattgaattttt-acaataaccgaacacttttgtctgtaaatattgcatatattattccattcataaatctatttttttc |
42203284 |
T |
|
| Q |
387 |
cctatg |
392 |
Q |
| |
|
| |||| |
|
|
| T |
42203283 |
catatg |
42203278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 113 - 376
Target Start/End: Complemental strand, 198128 - 197865
Alignment:
| Q |
113 |
gtggaatagaataacccggttgaagcgtaatgatcatacgtttgtaacgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcg |
212 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||| || | |||| |||| |||||||| ||||||||||| ||| || ||||| |
|
|
| T |
198128 |
gtggaatagaataacccggttgaagggtaatgatcatacgtctgtaatgcattgtatggcccagaataggtcctattcttctaccttttccaggtagtcg |
198029 |
T |
|
| Q |
213 |
atgactattcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattga |
312 |
Q |
| |
|
||| ||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||||||| |||| |||| |||||||||||||||||||||||| |
|
|
| T |
198028 |
atggctattcacagctaccaccttaacaccaaagaagagttcgacccaatgctttatttctgtcttagtgaatcccgattcgacattaaaagtatattga |
197929 |
T |
|
| Q |
313 |
ttttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccattcataaatc |
376 |
Q |
| |
|
|| ||||||||||| |||| |||||| |||||||||| ||| ||||| ||||||| |||||||| |
|
|
| T |
197928 |
ttctttcccaataaacgaagacttttttctgtaaatactgcgtatttgattccatccataaatc |
197865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 113 - 368
Target Start/End: Complemental strand, 256562 - 256308
Alignment:
| Q |
113 |
gtggaatagaataacccggttgaagcgtaatgatcatacgtttgtaacgcggtctatgtcccataataggtcgcattcttctaccctttattgggagtcg |
212 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||||| || | || | |||| |||||||| ||||||||||| ||| || ||||| |
|
|
| T |
256562 |
gtggaatagaataacccggttgaagggtaatgatcatacgtctgtaatgcattgtacggcccagaataggtcctattcttctaccttttccaggtagtcg |
256463 |
T |
|
| Q |
213 |
atgactattcatagctattaccttgacaccaaaaaagagttcgacccaatgttttatttctgtcctagttgatcctgattcgacattaaaagtatattga |
312 |
Q |
| |
|
||| ||||||| ||||| ||||| | ||||| ||||||| || |||||| |||||||||||| |||| |||| |||||||||||||||||||||||| |
|
|
| T |
256462 |
atggctattcacagctaccaccttaat-ccaaagaagagtttgaaccaatgctttatttctgtcttagtgaatcccgattcgacattaaaagtatattga |
256364 |
T |
|
| Q |
313 |
ttttttcccaataaccgaatacttttgtctgtaaatattgcatattttattccatt |
368 |
Q |
| |
|
|| ||||||||||| |||| |||||| |||||||||| ||| ||||| |||||||| |
|
|
| T |
256363 |
ttctttcccaataaacgaagacttttttctgtaaatactgcgtatttgattccatt |
256308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 388
Target Start/End: Complemental strand, 40231035 - 40230933
Alignment:
| Q |
288 |
tgattcgacattaaaagtatattgatttttt-cccaataaccgaatacttttgtctgt-aaatattgcatattttattccattcataaatctattttctt |
385 |
Q |
| |
|
||||||||| |||||||| |||||||||||| |||||||||| ||||||||||||| | ||||| ||||||| ||| | ||| |||||||||||||| |
|
|
| T |
40231035 |
tgattcgacgttaaaagtgtattgatttttttcccaataaccaaatacttttgtctataaaataccacatatttcattgaactcacaaatctattttctt |
40230936 |
T |
|
| Q |
386 |
ccc |
388 |
Q |
| |
|
||| |
|
|
| T |
40230935 |
ccc |
40230933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University