View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_high_29 (Length: 393)
Name: NF18156_high_29
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_high_29 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 380
Target Start/End: Original strand, 39091942 - 39092303
Alignment:
| Q |
19 |
catattggaagttcaatgtcatttgggaaccaacgtttgaatgaagggagttttgttactttgtgggagtttttggagatttgtgaccaagtattgacga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39091942 |
catattggaagttcaatgtcatttgggaaccaacgtttgaatgaagggagttttgttacttcgtgggagtttttggagatttgtgaccaagtattgacga |
39092041 |
T |
|
| Q |
119 |
aatgccaaaatgacttgccgtctgaaacaacatggttgacagtgaaaccaatgaagatgccgttggctaactccgttacttggatggctaagattggttg |
218 |
Q |
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| T |
39092042 |
aatgccaaaatgacttgccgtctgaaacaacatggttgacagtgaaaccaatgaagatgccgttggctaactccgttacttggacggctaagattggttg |
39092141 |
T |
|
| Q |
219 |
tgaagtggcttcgtggtttttaacaccgtttagtgggaaaaatgaatgaacaatggaaggaacgtagtttggttcaaggatgtttgatacggttgtattt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39092142 |
tgaagtggcttcgtggtttttaacaccgtttagtgggaaaaatgaatgaacaatggaaggaacgtagtttggttcaaggatgtttgatacggttgtattt |
39092241 |
T |
|
| Q |
319 |
tccgcttttgcatggacgaagagagcaccgaggttgttgcaaatgatggaacatgatgtgtt |
380 |
Q |
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| T |
39092242 |
tccgcttttgcatggacgaagagagcaccgaggttgttgcaaaggatggaacatgatgtgtt |
39092303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 21 - 380
Target Start/End: Original strand, 39088553 - 39088912
Alignment:
| Q |
21 |
tattggaagttcaatgtcatttgggaaccaacgtttgaatgaagggagttttgttactttgtgggagtttttggagatttgtgaccaagtattgacgaaa |
120 |
Q |
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| T |
39088553 |
tattggaagttcaacttcgtttgggaaccaacgttgaaatgaagggagttttggtatactctggaagttttttgagatttgtgaccaagtattgatgaaa |
39088652 |
T |
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| Q |
121 |
tgccaaaatgacttgccgtctgaaacaacatggttgacagtgaaaccaatgaagatgccgttggctaactccgttacttggatggctaagattggttgtg |
220 |
Q |
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| T |
39088653 |
tgccaaaacatcttgccgtcacaaacaacgtggttgagagtcaaaccaatgaagatgccattagctaactccgttacttgaactcctagaattggttgtg |
39088752 |
T |
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| Q |
221 |
aagtggcttcgtggtttttaacaccgtttagtgggaaaaatgaatgaacaatggaaggaacgtagtttggttcaaggatgtttgatacggttgtattttc |
320 |
Q |
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| T |
39088753 |
aagtggcttcgtagtttttaactccgttaagtgggaaaaatgagtgaactatagaaggaacatagtttggtttaaggatgtctgatacggttgtgttttc |
39088852 |
T |
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| Q |
321 |
cgcttttgcatggacgaagagagcaccgaggttgttgcaaatgatggaacatgatgtgtt |
380 |
Q |
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| T |
39088853 |
cgctttggcgtggatgaagagagcaccaatgttgttgcaaatgatggaacatgatgtgtt |
39088912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 21 - 376
Target Start/End: Original strand, 39082899 - 39083254
Alignment:
| Q |
21 |
tattggaagttcaatgtcatttgggaaccaacgtttgaatgaagggagttttgttactttgtgggagtttttggagatttgtgaccaagtattgacgaaa |
120 |
Q |
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|||||||||||||| || |||||||||||||||| |||||||||||||| | || ||||||||| ||| ||||||| ||||||| |||||||||| |
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| T |
39082899 |
tattggaagttcaacgttgtttgggaaccaacgttgaaatgaagggagtttggatattttgtgggaaccttttgagatttcagaccaagaattgacgaaa |
39082998 |
T |
|
| Q |
121 |
tgccaaaatgacttgccgtctgaaacaacatggttgacagtgaaaccaatgaagatgccgttggctaactccgttacttggatggctaagattggttgtg |
220 |
Q |
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| T |
39082999 |
tgccaaaatgacttgccgtctaaaacaacatggttgacagtgaaagcaatgaagataccgttacttaactccgttacttggactgctagaattggttgag |
39083098 |
T |
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| Q |
221 |
aagtggcttcgtggtttttaacaccgtttagtgggaaaaatgaatgaacaatggaaggaacgtagtttggttcaaggatgtttgatacggttgtattttc |
320 |
Q |
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| T |
39083099 |
acgtggcttcgtagtttttaatgccgttaagtgggaaaaatgagtgaactatagaaggaacatagtctggtttaaggatgtcggaaacacttgtgttttc |
39083198 |
T |
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| Q |
321 |
cgcttttgcatggacgaagagagcaccgaggttgttgcaaatgatggaacatgatg |
376 |
Q |
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| T |
39083199 |
tgcttttgcgtggatgaagagagcaccaaggttgttgcaaatgatggaacatgatg |
39083254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 380
Target Start/End: Original strand, 39071464 - 39071802
Alignment:
| Q |
42 |
tgggaaccaacgtttgaatgaagggagttttgttactttgtgggagtttttggagatttgtgaccaagtattgacgaaatgccaaaatgacttgccgtct |
141 |
Q |
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| T |
39071464 |
tgggaaccaacgttgaaatgaagggagttttgatattttgtgggaacctttcaagatttgggaccaagaattgacgaaatgccaaaatgacttggcgtct |
39071563 |
T |
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| Q |
142 |
gaaacaacatggttgacagtgaaaccaatgaagatgccgttggctaactccgttacttggatggctaagattggttgtgaagtggcttcgtggtttttaa |
241 |
Q |
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| T |
39071564 |
gcaacaatgtggttgcatgtgaattcaatgaagacgccattacttaactccgttacttggactgctagagttggttttgacgtagcttcgtagtttttaa |
39071663 |
T |
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| Q |
242 |
caccgtttagtgggaaaaatgaatgaacaatggaaggaacgtagtttggttcaaggatgtttgatacggttgtattttccgcttttgcatggacgaagag |
341 |
Q |
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| T |
39071664 |
cgccgttaaatggaaaaaacgagtggacaattagaggtgtgtagttggattgaaagatgtcatcgaccgttgtattttgtgttgtggcatggacgaatag |
39071763 |
T |
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| Q |
342 |
agcaccgaggttgttgcaaatgatggaacatgatgtgtt |
380 |
Q |
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||||| |||||||||||||| ||||||||||||||||| |
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| T |
39071764 |
ggcaccaaggttgttgcaaattatggaacatgatgtgtt |
39071802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 266
Target Start/End: Original strand, 5125 - 5240
Alignment:
| Q |
151 |
tggttgacagtgaaaccaatgaagatgccgttggctaactccgttacttggatggctaagattggttgtgaagtggcttcgtggtttttaacaccgttta |
250 |
Q |
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| T |
5125 |
tggttaactgtgaagccaatgaagatgccgtcaactaactccgttacttggattgcaagtaatggttgtgatgttccttcgtagtttttaactccattta |
5224 |
T |
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| Q |
251 |
gtgggaaaaatgaatg |
266 |
Q |
| |
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||| ||||||||||| |
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| T |
5225 |
gtgcaaaaaatgaatg |
5240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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