View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_high_3 (Length: 708)
Name: NF18156_high_3
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 652; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 18 - 692
Target Start/End: Complemental strand, 40453987 - 40453310
Alignment:
| Q |
18 |
gtctatactatacaatgaaaaacttgcttatacacatgtgaaataatttacacacagagagaaaagagatactaacctggtttgtagaactagtctttgg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40453987 |
gtctatactatacaatgaaaaacttgcttatacacatgtgaaataatttacacacagagagaaaagagatactaacctggtttgtagaactagactttgg |
40453888 |
T |
|
| Q |
118 |
aacagaggagcttgaatactgtttagatgaatgtttatcttcatcttcatgaagcacttgagcattctttttgttatcatcaaccttagttaaacccaaa |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453887 |
aacagaggagcttgaatactgtttagatgaatgtttatcttcatcttcatgaagcacttgagcattctttttgttatcatcaaccttagttaaacccaaa |
40453788 |
T |
|
| Q |
218 |
acaggttcataatctaatacaccatccaaagaaactgtgtcaccaagcaaatatcttgatgaagtaggaggagtgattaaatcagaagctggcttaaccc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453787 |
acaggttcataatctaatacaccatccaaagaaactgtgtcaccaagcaaatatcttgatgaagtaggaggagtgattaaatcagaagctggcttaaccc |
40453688 |
T |
|
| Q |
318 |
aactccttcttaaaatactatcaaccggttttgaagagtaattgtttgcaatatgttcagtcactttttctgttgtagtagtacttttcttcttctgatc |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453687 |
aactccttcttaaaatactatcaaccggttttgaagagtaattgtttgcaatatgttcagtcactttttctgttgtagtagtacttttcttcttctgatc |
40453588 |
T |
|
| Q |
418 |
atgagtactctttgttgcatttttctttttcttatcgctaagctttgaagtagtgtttttcttggccttttcatggacatgtttagggttgatgggtaaa |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453587 |
atgagtactctttgttgcatttttctttttcttatcgctaagctttgaagtagtgtttttcttggccttttcatggacatgtttagggttgatgggtaaa |
40453488 |
T |
|
| Q |
518 |
ggagaaggtgaactaggagcagtgacagtgagatctcttgctggagttctttttggatctgtgatgatggggttgtggcgatcaatggctctaccaccaa |
617 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453487 |
ggagaaggtgaactaggagcagtgacagtgagatctcttgctggagttctttttggatctgtgatgatggggttgtggcgatcaatggctctaccaccaa |
40453388 |
T |
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| Q |
618 |
agagattaatggtgttggaagaagaagaa---gaagcatgattagtgttaagacatatggctgttgaggcttgtgatg |
692 |
Q |
| |
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|| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40453387 |
agtgattaatggtgttggaagaagaagaagaagaagcatgattagtattaagacatatggctgttgaggcttgtgatg |
40453310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 28229182 - 28229060
Alignment:
| Q |
89 |
ctaacctggtttgtagaactagtctttggaacagaggagcttgaatactgtttagatgaatgtttatcttcatcttcatgaagcacttgagcattctttt |
188 |
Q |
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|
|||||||||||||||||||||| ||||||||||| ||||||||| | |||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28229182 |
ctaacctggtttgtagaactagattttggaacagatgagcttgaacaaggtttagataaatgtttatcttcatcttcacgaagcacttgagcattctttt |
28229083 |
T |
|
| Q |
189 |
tgttatcatcaaccttagttaaa |
211 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
28229082 |
tgttatcatcaaccttagttaaa |
28229060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 28229278 - 28229217
Alignment:
| Q |
18 |
gtctatactatacaatgaaaaacttgcttatacacatgtgaaataatttacacacagagaga |
79 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||| |
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| T |
28229278 |
gtctagactatacaatgaaaaagttgcttatacacatgtgaaataattcacagagagagaga |
28229217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 544 - 614
Target Start/End: Complemental strand, 31252282 - 31252213
Alignment:
| Q |
544 |
agtgagatctcttgctggagttctttttggatctgtgatgatggggttgtggcgatcaatggctctaccac |
614 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
31252282 |
agtgagatctcttgagggagttctttttggatctgtgatgat-gggttgtggcaatcaatggctctaccac |
31252213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 193 - 356
Target Start/End: Complemental strand, 31252532 - 31252370
Alignment:
| Q |
193 |
atcatcaaccttagttaaacccaaaacaggttcataatctaa-tacaccatccaaagaaactgtgtcaccaagcaaatatcttgatgaagtaggaggagt |
291 |
Q |
| |
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|||||||| ||||||||||||||||||| | |||| ||||| | |||||||| ||||| | |||||||||||||||||||| | || |||| ||||| |
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| T |
31252532 |
atcatcaatcttagttaaacccaaaacaaggtcattgtctaaattcaccatccgaagaatttatgtcaccaagcaaatatcttaacgacttaggtggagt |
31252433 |
T |
|
| Q |
292 |
gattaaatcagaagctg-gcttaacccaactccttcttaaaatactatcaaccggttttgaagagt |
356 |
Q |
| |
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||| || ||||||| || || |||||||||| ||||| |||||||||| ||||||||||||| |
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|
| T |
31252432 |
gatgaagtcagaaggtgacctaaacccaactc---cttaagatactatcaattggttttgaagagt |
31252370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 299
Target Start/End: Complemental strand, 31286474 - 31286398
Alignment:
| Q |
224 |
tcataatctaa-tacaccatccaaagaaactgtgtcaccaagcaaatatcttgatgaagtaggaggagtgattaaat |
299 |
Q |
| |
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||||||||||| || |||||||||||||| || |||||||||||||||| ||||||| | | ||| ||||||||||| |
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|
| T |
31286474 |
tcataatctaagtataccatccaaagaaattgcgtcaccaagcaaatattttgatgatgcaagagaagtgattaaat |
31286398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 346 - 488
Target Start/End: Original strand, 20008124 - 20008263
Alignment:
| Q |
346 |
ttttgaagagtaattgtttgcaatatgttcagtcactttttctgttgtagtagtacttttcttcttctgatcatgagtactctttgttgcatttttcttt |
445 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| | |||||||| ||||||| |||||||| || || || | ||| ||| ||||| ||||| ||| |
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| T |
20008124 |
ttttgaagagtaattgtttgcaatttgtttagtaagtttttctgatgtagta---cttttctttttatggacacgggtagccttggttgcttttttattt |
20008220 |
T |
|
| Q |
446 |
ttcttatcgctaagctttgaagtagtgtttttcttggcctttt |
488 |
Q |
| |
|
||||||| | ||| |||| ||||| ||||||||||||||| |
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| T |
20008221 |
ttcttattatttagcaatgaaatagtgattttcttggcctttt |
20008263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 346 - 378
Target Start/End: Complemental strand, 24973587 - 24973555
Alignment:
| Q |
346 |
ttttgaagagtaattgtttgcaatatgttcagt |
378 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
24973587 |
ttttgaagagtaattgtttgcaatttgttcagt |
24973555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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