View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_high_31 (Length: 382)
Name: NF18156_high_31
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 141 - 365
Target Start/End: Original strand, 35079302 - 35079525
Alignment:
| Q |
141 |
tgcaaattgtggttttattcaataaatgtgaaatttatagatggcctccggctatgactacaatatctgtatacaacatcatctcatgattcaatgcagc |
240 |
Q |
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| T |
35079302 |
tgcaagttggggttttattcaataaatgtgaa-tttatagatggcctccggctatgactacaatatctgtatacaacatcatctcatgattcaatgcagc |
35079400 |
T |
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| Q |
241 |
aatggaagaagtattaacaatcctttcgttagccaagctacgttcacacatgtcaagtgcatcgctagcatatttgacagccaagcttatcgtttccgga |
340 |
Q |
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| T |
35079401 |
aatggaagaagtattaacaatcttttcgttagccaagctacgttcacacatgtcaagtgcatcgctagcatatttgacagccaagcttatcatttccgga |
35079500 |
T |
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| Q |
341 |
tcctcgcgcaatgcaccttgtacct |
365 |
Q |
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| T |
35079501 |
tcctcgcgcaatgcaccttgtacct |
35079525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 172 - 365
Target Start/End: Original strand, 35074363 - 35074556
Alignment:
| Q |
172 |
aatttatagatggcctccggctatgactacaatatctgtatacaacatcatctcatgattcaatgcagcaatggaagaagtattaacaatcctttcgtta |
271 |
Q |
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| T |
35074363 |
aatttatagatggcctccggctatcactacaatatttgtgtataacttcatgtcatgattcagtgcaacaatggaagaagtattgacaatcttttcatca |
35074462 |
T |
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| Q |
272 |
gccaagctacgttcacacatgtcaagtgcatcgctagcatatttgacagccaagcttatcgtttccggatcctcgcgcaatgcaccttgtacct |
365 |
Q |
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| T |
35074463 |
gccaagctacgttcacacatgtcaagtgcatcgctagcataattgacagccatgcttatcatttccggatcctcacgcaatgcaccttgtacct |
35074556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 177 - 345
Target Start/End: Original strand, 25802714 - 25802882
Alignment:
| Q |
177 |
atagatggcctccggctatgactacaatatctgtatacaacatcatctcatgattcaatgcagcaatggaagaagtattaacaatcctttcgttagccaa |
276 |
Q |
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| T |
25802714 |
atagatgacctccagctatcactacaatatcagtatacaactccatctcatgattcagtgtagcaatggaagaaatattaacaatcttttcattagctaa |
25802813 |
T |
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| Q |
277 |
gctacgttcacacatgtcaagtgcatcgctagcatatttgacagccaagcttatcgtttccggatcctc |
345 |
Q |
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| T |
25802814 |
gctacgttcgcacatgtcgactgcatcaccagcatatttgacagccaaccctatcaattccggatcctc |
25802882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 173 - 317
Target Start/End: Original strand, 23922288 - 23922432
Alignment:
| Q |
173 |
atttatagatggcctccggctatgactacaatatctgtatacaacatcatctcatgattcaatgcagcaatggaagaagtattaacaatcctttcgttag |
272 |
Q |
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| T |
23922288 |
atttatagatggcctccggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggcagacgtattaacattcttttcacgag |
23922387 |
T |
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| Q |
273 |
ccaagctacgttcacacatgtcaagtgcatcgctagcatatttga |
317 |
Q |
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| T |
23922388 |
ctaagctatcttcacacctaccaagtgcatcactagcatatttga |
23922432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 173 - 313
Target Start/End: Original strand, 23914651 - 23914791
Alignment:
| Q |
173 |
atttatagatggcctccggctatgactacaatatctgtatacaacatcatctcatgattcaatgcagcaatggaagaagtattaacaatcctttcgttag |
272 |
Q |
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| T |
23914651 |
atttatagatggcctgcggctatcaatacaatatcattatataactgcatctcatgattcaatgtagcaatggcagacgtattaacattcttttcacgag |
23914750 |
T |
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| Q |
273 |
ccaagctacgttcacacatgtcaagtgcatcgctagcatat |
313 |
Q |
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| T |
23914751 |
ctaagctatcttcacaccttccaagtgcatcactagcatat |
23914791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 338
Target Start/End: Original strand, 24435853 - 24435947
Alignment:
| Q |
244 |
ggaagaagtattaacaatcctttcgttagccaagctacgttcacacatgtcaagtgcatcgctagcatatttgacagccaagcttatcgtttccg |
338 |
Q |
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| T |
24435853 |
ggaagaagtattaacaatcttttcattaactaagctatgttcgcactcttcaagtgcatcactagcatatgcaacatccaagcttatagtttccg |
24435947 |
T |
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