View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18156_high_36 (Length: 355)
Name: NF18156_high_36
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_high_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 15 - 342
Target Start/End: Complemental strand, 54214169 - 54213842
Alignment:
| Q |
15 |
agaataatcttagctgacattgtttctctctaatgcagactcattgtcattttacaagacaaagcatatgtatatgaaataaatagtctttcaatcttgg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54214169 |
agaataatcttagctgacattgtttctctctaatgcagactcattgtcattttacaagacaaagcatatgtatatgaaataaatagtctttcaatcttgg |
54214070 |
T |
|
| Q |
115 |
acactttcgacacggttccaaatattaaaggtgaggttgcaaatactacttgataagatttcactcagtcaggaattaatcttggacataggtttgtgat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54214069 |
acactttcgacacggttccaaatattaaaggtgaggttgcaaatactacttgataagatttcactcagtcaggaattaatcttggacataggtttgtgat |
54213970 |
T |
|
| Q |
215 |
aagcattgtttttccttcaaattacttgaaaagttaatatagatttcttatttccatatacatattatcctctgatagactagcacctttcattttgact |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54213969 |
aagcattgtttttccttcaaattacttgaaaagttaatatagatttcttatttccatatacatattatcctctgatagactagcacctttcattttgact |
54213870 |
T |
|
| Q |
315 |
tttggatgagtgtgtcccttttgtgcct |
342 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
54213869 |
tttggatgagtgtgtcccttttgtgcct |
54213842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University