View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18156_high_40 (Length: 341)
Name: NF18156_high_40
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_high_40 |
 | |
|
| [»] scaffold0361 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 2 - 316
Target Start/End: Complemental strand, 4940682 - 4940368
Alignment:
| Q |
2 |
aaatagaccaaagatagactaaaattagcatactaatttgccgatctatttccttcacgtcatggttgatttgtacttgccaactcatgcattttaggtc |
101 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4940682 |
aaatagactaaagatagactaaaattagctaactaatttgccaatctatttccttcacgtcatggttgatttgtacttgccaactcatgcattttagatc |
4940583 |
T |
|
| Q |
102 |
acgaatgcaccgaatgaaggtaagaacatttccattgattatgttttcttgtcaccatgtctactaaaacttttaagtcactctccacatgtaggggtgt |
201 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4940582 |
acgaatgcgccgaatgaaggtaagagcatttccattgattacgttttcttgtcaccatgtctactaaaacttttaagtcactctccacttgtaggggtgt |
4940483 |
T |
|
| Q |
202 |
gaacccctctctctgaagcatatccatatcgatatatttacctcacatctctgcatgtagcgtgtcacatgagcctatcttacaagcataactactaaaa |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
4940482 |
gaacccctctctctgaagcatatccatatcgatatatttgcctcacatctctgcatgtagcgtgtcacatgagcctatcttacgagaataactactaaaa |
4940383 |
T |
|
| Q |
302 |
caatttccgtcacat |
316 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
4940382 |
caattttcgtcacat |
4940368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 309
Target Start/End: Complemental strand, 491093 - 490787
Alignment:
| Q |
9 |
ccaaagatagactaaaattagcatactaatttgccgatctatttccttcacgtcatg----gttgatttgtacttgccaactcatgcattttaggtcacg |
104 |
Q |
| |
|
|||||||||||||||||||||| | ||| || ||||| |||||||||| |||| |||||| || || |||||||||||| |||||||||||| |
|
|
| T |
491093 |
ccaaagatagactaaaattagctagccaatctgttgatctgtttccttcactccatgtatggttgatatgaacatgccaactcatgttttttaggtcacg |
490994 |
T |
|
| Q |
105 |
aatgcaccgaatgaaggtaagaacatttccattgat--tatgttttcttgtcaccatgtctactaaaacttttaagtcactctccacatgtaggggtgtg |
202 |
Q |
| |
|
||||| | |||| |||||| |||||||||||||||| || ||| | ||| |||||||| ||||||| | | |||| || ||||| || | | ||||| |
|
|
| T |
490993 |
aatgcgctgaatcaaggtaggaacatttccattgatgttacatttccctgttaccatgtcaactaaaagtgatgagtcgctttccacttgcaagtgtgtg |
490894 |
T |
|
| Q |
203 |
aacccctctctctgaagcatatccatatcgatatatttacctcacatctctgcatgtagcgtgtcacatgagcctatcttacaagcataactactaaaac |
302 |
Q |
| |
|
| ||||| |||| || |||||||||| | ||||| | || |||||||||||||||| || ||| ||||| |||||||||| |||||||||| | |||| |
|
|
| T |
490893 |
atcccctgtctccgagccatatccataccaatatacatgccccacatctctgcatgtaacgcgtcgcatgaacctatcttacgagcataactattcaaac |
490794 |
T |
|
| Q |
303 |
aatttcc |
309 |
Q |
| |
|
||||||| |
|
|
| T |
490793 |
aatttcc |
490787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 35875561 - 35875257
Alignment:
| Q |
11 |
aaagatagactaaaattagcatactaatttgccgatctatttccttcacgtcat----ggttgatttgtacttgccaactcatgcattttaggtcacgaa |
106 |
Q |
| |
|
||||||||||||||||| || | ||| |||||||| ||||||||||| ||| |||||||||| |||||||||||||| |||||| ||||||| |
|
|
| T |
35875561 |
aaagatagactaaaatttgctagccaatccgccgatctgtttccttcacgccatatatggttgatttgaacttgccaactcatagtttttagatcacgaa |
35875462 |
T |
|
| Q |
107 |
tgcaccgaatgaaggtaagaacatttccattga--ttatgttttcttgtcaccatgtctactaaaacttttaagtcactctccacatgtaggggtgtgaa |
204 |
Q |
| |
|
||| |||||| |||||| ||||||| |||||| ||| ||| | || ||||| || || |||||||| |||| |||||||| || ||| |||||| |
|
|
| T |
35875461 |
tgcgccgaatcaaggtaggaacattctcattgatgttacatttcccagttaccatatcgaccaaaactttggagtcgctctccacttgaaggtgtgtgat |
35875362 |
T |
|
| Q |
205 |
cccctctctctgaag-catatccatatcgatatatttacctcacatctctgcatgtagcgtgtcacatgagcctatcttacaagcataactactaaaaca |
303 |
Q |
| |
|
||||| ||| | ||| |||||||||| | ||||| | || ||||||||||||||||||| ||| ||| | |||||||||| |||||||||| | ||||| |
|
|
| T |
35875361 |
cccctgtct-tcaagccatatccataccaatatacatgccccacatctctgcatgtagcgcgtcgcattatcctatcttacgagcataactattcaaaca |
35875263 |
T |
|
| Q |
304 |
atttcc |
309 |
Q |
| |
|
|||||| |
|
|
| T |
35875262 |
atttcc |
35875257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 309
Target Start/End: Complemental strand, 39915160 - 39914912
Alignment:
| Q |
63 |
atggttgatttgtacttgccaactcatgcattttaggtcacgaatgcaccgaatgaaggtaagaacatttccattgat--tatgttttcttgtcaccatg |
160 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| ||||||||| |||||| ||| | |||||||| | ||||| || ||| || || |||||| |
|
|
| T |
39915160 |
atggttgatttgaacttgccaactcatgttttttagatcacgaatgtgccgaatcaagacacgaacattttcgttgatgttacatttcctagttaccatg |
39915061 |
T |
|
| Q |
161 |
tctactaaaacttttaagtcactctccacatgtaggggtgtgaacccctctctctgaagcatatccatatcgatatatttacctcacatctctgcatgta |
260 |
Q |
| |
|
|| || |||||||| |||| |||||||| |||||| |||||| ||| | ||| ||| | |||||||| | |||||| | || |||||||||||||||| |
|
|
| T |
39915060 |
tcgaccaaaactttggagtcgctctccacttgtaggtgtgtgatcccttgtctttgagccttatccataccaatatatatgccccacatctctgcatgta |
39914961 |
T |
|
| Q |
261 |
gcgtgtcacatgagcctatcttacaagcataactactaaaacaatttcc |
309 |
Q |
| |
|
| |||| ||||| | |||||||| ||| |||||| | ||||||||||| |
|
|
| T |
39914960 |
acatgtctcatgatcttatcttacgagcttaactattcaaacaatttcc |
39914912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 9 - 306
Target Start/End: Complemental strand, 3243740 - 3243437
Alignment:
| Q |
9 |
ccaaagatagactaaaattagcatactaatttgccgatctatttccttcacgtcatg----gttgatttgtacttgccaactcatgcattttaggtcacg |
104 |
Q |
| |
|
|||||||||||||||| ||||| || ||| ||| ||| | ||||||||| | |||| |||||| || || ||| |||||||| |||||||||||| |
|
|
| T |
3243740 |
ccaaagatagactaaagttagctaaccaatctgctgatttgtttccttcaggccatgtatggttgatctgaacatgctaactcatgttttttaggtcacg |
3243641 |
T |
|
| Q |
105 |
aatgcaccgaatgaaggtaagaacatttccattgat--tatgttttcttgtcaccatgtctactaaaacttttaagtcactctccacatgtaggggtgtg |
202 |
Q |
| |
|
|||| |||||| |||||| |||||||| ||||| | || ||| | ||| |||||||| ||||||| | | ||| || ||||| || ||| ||||| |
|
|
| T |
3243640 |
aatgtgccgaatcaaggtaggaacattttcattgttgttacatttccctgttaccatgtcaactaaaagtgatgggtcgctttccacttgcaggtgtgtg |
3243541 |
T |
|
| Q |
203 |
aacccctctctctgaagcatatccatatcgatatatttacctcacatctctgcatgtagcgtgtcacatgagcctatcttacaagcataactactaaaac |
302 |
Q |
| |
|
| ||||| ||| ||| |||||||||| | ||||| | || ||||||||||||||||||||||| ||||| |||||||||| |||||| ||| | |||| |
|
|
| T |
3243540 |
atcccctgtctttgagccatatccataccaatatacatgccccacatctctgcatgtagcgtgtcgcatgaacctatcttacgagcatagctattcaaac |
3243441 |
T |
|
| Q |
303 |
aatt |
306 |
Q |
| |
|
|||| |
|
|
| T |
3243440 |
aatt |
3243437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 309
Target Start/End: Original strand, 32295683 - 32295933
Alignment:
| Q |
63 |
atggttgatttgtacttgccaactcatgcattttaggtcacgaatgcaccgaatgaaggtaagaacatttccattga--ttatgttttcttgtcaccatg |
160 |
Q |
| |
|
|||||||||||| ||||| ||||||||| |||||| ||||||||||||||||| |||||| ||||||| ||||| | ||| ||| | ||| |||| | |
|
|
| T |
32295683 |
atggttgatttgaacttgtcaactcatgttttttagatcacgaatgcaccgaatcaaggtaggaacattcccattaatgttacatttccatgttaccacg |
32295782 |
T |
|
| Q |
161 |
tctactaaaacttttaagtcactctccacatgtaggggtgtgaacccctctctctgaagc--atatccatatcgatatatttacctcacatctctgcatg |
258 |
Q |
| |
|
| || |||||||| |||| |||||||| |||||| | |||| ||||| ||||||| | |||| |||| | ||||| | || ||||||||| |||| |
|
|
| T |
32295783 |
ttaaccaaaactttagagtcgctctccacttgtaggtgcgtgatcccctgtctctgagccatatattcataccaatatacatgccccacatctctacatg |
32295882 |
T |
|
| Q |
259 |
tagcgtgtcacatgagcctatcttacaagcataactactaaaacaatttcc |
309 |
Q |
| |
|
|| || || ||||| |||||||||| |||||||||| | ||||||||||| |
|
|
| T |
32295883 |
taacgcgttgcatgaacctatcttacgagcataactattcaaacaatttcc |
32295933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 11896037 - 11896204
Alignment:
| Q |
9 |
ccaaagatagactaaaattagcatactaatttgccgatctatttccttcacgtcatg----gttgatttgtacttgccaactcatgcattttaggtcacg |
104 |
Q |
| |
|
|||||||||||||||||||||| | ||| ||| ||||||||||||||||| |||| |||||| || || |||||||||||| |||||||||||| |
|
|
| T |
11896037 |
ccaaagatagactaaaattagctagccaatctgctgatctatttccttcacgccatgtatggttgatatgaacatgccaactcatgttttttaggtcacg |
11896136 |
T |
|
| Q |
105 |
aatgcaccgaatgaaggtaagaacatttccattga--ttatgttttcttgtcaccatgtctactaaaa |
170 |
Q |
| |
|
||||| | |||| |||||| |||||||| | |||| ||| ||||| ||| |||||||| ||||||| |
|
|
| T |
11896137 |
aatgcgctgaattaaggtaggaacattttcgttgatgttacattttcctgttaccatgtcaactaaaa |
11896204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 307
Target Start/End: Original strand, 25376219 - 25376465
Alignment:
| Q |
63 |
atggttgatttgtacttgccaactcatgcattttaggtcacgaatgcaccgaatgaaggtaagaacatttccattga--ttatgttttcttgtcaccatg |
160 |
Q |
| |
|
||||||||| || || |||||||||||| |||||||||| |||||| || ||| |||||| ||||||||||||||| ||| ||| | | | |||||| |
|
|
| T |
25376219 |
atggttgatctgaacatgccaactcatgttttttaggtcatgaatgcgccaaatcaaggtaggaacatttccattgatgttacatttccctattaccatg |
25376318 |
T |
|
| Q |
161 |
tctactaaaacttttaagtcactctccacatgtaggggtgtgaacccctctctctgaagcatatccatatcgatatatttacctcacatctctgcatgta |
260 |
Q |
| |
|
|| ||||||| | | ||| | ||||| || | | |||||| |||| |||| || |||||||||| | ||||| | || |||||||||||||||| |
|
|
| T |
25376319 |
tcaactaaaagtgatgagttgttttccacttgcaagagtgtgatccccgatctccgagccatatccataccaatatacatgccccacatctctgcatgta |
25376418 |
T |
|
| Q |
261 |
gcgtgtcacatgagcctatcttacaagcataactactaaaacaattt |
307 |
Q |
| |
|
|| ||||||||| | |||||||| |||||| ||| | ||||||||| |
|
|
| T |
25376419 |
acgcgtcacatgaacttatcttacgagcatagctattcaaacaattt |
25376465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 309
Target Start/End: Original strand, 25582903 - 25582965
Alignment:
| Q |
247 |
catctctgcatgtagcgtgtcacatgagcctatcttacaagcataactactaaaacaatttcc |
309 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||||||| |||||| ||| | ||||||||||| |
|
|
| T |
25582903 |
catctctgcatgtaacgcgtcacatgaacctatcttacgagcatagctattcaaacaatttcc |
25582965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 295
Target Start/End: Original strand, 40575401 - 40575546
Alignment:
| Q |
150 |
ttgtcaccatgtctactaaaacttttaagtcactctccacatgtaggggtgtgaacccctctctctgaagcatatccatatcgatatatttacctcacat |
249 |
Q |
| |
|
|||| ||||| |||| |||||||||| |||| ||||||| ||| || ||| | ||||| |||| | ||||| |||||| ||||| | |||||||| |
|
|
| T |
40575401 |
ttgttaccatatctaataaaacttttgagtcgctctccatttgttggtgtgctatcccctgtctccaagccatatacatatcaatatacatgcctcacat |
40575500 |
T |
|
| Q |
250 |
ctctgcatgtagcgtgtcacatgagcctatcttacaagcataacta |
295 |
Q |
| |
|
|| |||||||| |||||||||| | | |||||||||||||||||| |
|
|
| T |
40575501 |
ctttgcatgtaacgtgtcacataaatcgatcttacaagcataacta |
40575546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 40575575 - 40575628
Alignment:
| Q |
242 |
cctcacatctctgcatgtagcgtgtcacatgagcctatcttacaagcataacta |
295 |
Q |
| |
|
||||| |||| |||||||| |||||||||||| || |||||||||||||||||| |
|
|
| T |
40575575 |
cctcatatctttgcatgtaacgtgtcacatgaaccgatcttacaagcataacta |
40575628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 213
Target Start/End: Complemental strand, 6501 - 6359
Alignment:
| Q |
76 |
acttgccaactcatgcattttaggtcacgaatgcaccgaatgaaggtaagaacatttccattg-----attatgttttcttgtcaccatgtctactaaaa |
170 |
Q |
| |
|
||||||||||||||| ||||||||| || ||||| ||||||||||||| |||||| ||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
6501 |
acttgccaactcatgtattttaggtaaccaatgcgccgaatgaaggtagaaacattcacattgatatcattatgttttcatgtcaccatgtctactaaaa |
6402 |
T |
|
| Q |
171 |
cttttaagtcactctccacatgtaggggtgtgaacccctctct |
213 |
Q |
| |
|
||||| ||| ||||||| |||||| | | |||||||||||| |
|
|
| T |
6401 |
cttttgagttgctctccatttgtaggtgagagaacccctctct |
6359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 24158174 - 24157872
Alignment:
| Q |
12 |
aagatagactaaaattagcatactaatttgccgatctatttcctt-cacgtcatg----gttgatttgtacttgccaactcatgcattttaggtcacgaa |
106 |
Q |
| |
|
||||||||||||||||||| | | ||| ||| ||||| ||||||| |||| |||| |||||| || | |||||||||||| |||||||||||||| |
|
|
| T |
24158174 |
aagatagactaaaattagcttgccaatctgctgatctgtttcctttcacgccatgtatggttgatatgaatatgccaactcatgttttttaggtcacgaa |
24158075 |
T |
|
| Q |
107 |
tgcaccgaatgaaggtaagaacatttccattga--ttatgttttcttgtcaccatgtctactaaaacttttaagtcactctccacatgtaggggtgtgaa |
204 |
Q |
| |
|
||| | |||| |||||| |||| |||||||||| |||| ||| | ||| |||||||| ||||||| | | |||| || ||||| || | |||||| |
|
|
| T |
24158074 |
tgcgctgaatcaaggtaggaacttttccattgatgttatatttccatgttaccatgtcaactaaaagtgatgagtcgctttccacttgcaattgtgtgat |
24157975 |
T |
|
| Q |
205 |
cccctctctctgaagcatatccatatcgatatatttacctcacatctctgcatgtagcgtgtcacatgagcctatcttacaagcataactactaaaacaa |
304 |
Q |
| |
|
||||| |||| || |||||||||| | |||||| | ||||||| |||||||| |||||| ||||| |||||||||| |||||| ||| | |||||| |
|
|
| T |
24157974 |
cccctgtctccgagccatatccataccaatatatatggaccacatctttgcatgtaacgtgtcgcatgaacctatcttacgagcatagctattcaaacaa |
24157875 |
T |
|
| Q |
305 |
ttt |
307 |
Q |
| |
|
||| |
|
|
| T |
24157874 |
ttt |
24157872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 248 - 309
Target Start/End: Complemental strand, 5646227 - 5646166
Alignment:
| Q |
248 |
atctctgcatgtagcgtgtcacatgagcctatcttacaagcataactactaaaacaatttcc |
309 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||| ||| ||||||||| | ||||||||||| |
|
|
| T |
5646227 |
atctctgcatgtagcgtgtcgcatgagtctatctcacaggcataactattcaaacaatttcc |
5646166 |
T |
|
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 6372752 - 6372633
Alignment:
| Q |
9 |
ccaaagatagactaaaattagcatactaatttgccgatctatttccttcacgtca----tggttgatttgtacttgccaactcatgcattttagg-tcac |
103 |
Q |
| |
|
||||||||| |||||||||||| | ||| |||||| | ||||||||||| || ||||||||||| ||||||||||||||| |||| || ||| |
|
|
| T |
6372752 |
ccaaagatacactaaaattagctagccaatcagccgatttgtttccttcacgccaagtatggttgatttgaacttgccaactcatgtttttttggatcat |
6372653 |
T |
|
| Q |
104 |
gaatgcaccgaatgaaggta |
123 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
6372652 |
gaatgcaccgaatcaaggta |
6372633 |
T |
|
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