View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_high_43 (Length: 330)
Name: NF18156_high_43
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_high_43 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 35619388 - 35619692
Alignment:
| Q |
18 |
ctcctcccgtcgttactccgttaccggctccgacggatctctcacaaaatccgttctatattcatccttctgaaaatcctttaaatggattggggcaaga |
117 |
Q |
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| T |
35619388 |
ctcctcccgtcgttactccgttaccggctccgacggatctctcacaaaatccgttctatattcatccttctgaaaatcctttaaatggattggggcaaga |
35619487 |
T |
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| Q |
118 |
attacaatcactcaacaatgtgattacctatatcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagtt |
217 |
Q |
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| T |
35619488 |
attacaatcactcaacaatgtgattacctatatcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagtt |
35619587 |
T |
|
| Q |
218 |
ctaaaatatctcaaaggatgttcaggacgaggtatatatcttctttcctagagcctcatctttgcagattcaaggatacaagacgttccattccaggcct |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35619588 |
ctaaaatatctcaaaggatgttcaggacgaggtatatatcttctttcctagagcctcatctttgcagattcaaggatacaagacgttccattccaggcca |
35619687 |
T |
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| Q |
318 |
atgct |
322 |
Q |
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||||| |
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| T |
35619688 |
atgct |
35619692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 6568038 - 6567983
Alignment:
| Q |
188 |
caaactcattataatgcagctatgagagttctaaaatatctcaaaggatgttcagg |
243 |
Q |
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| T |
6568038 |
caaactcactacaatgctggtatgagagttctcaaatatctcaaaggatgtccagg |
6567983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 216
Target Start/End: Complemental strand, 44666893 - 44666826
Alignment:
| Q |
149 |
atcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagt |
216 |
Q |
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||||| ||||||||||||||| |||| ||||| |||||||||||| ||||||||||| ||||||| |
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| T |
44666893 |
atcacacaacaattaagccaatttctttctaaaccaacacaaactcatcataatgcagctctgagagt |
44666826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 19813128 - 19813052
Alignment:
| Q |
140 |
attacctatatcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagt |
216 |
Q |
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||||||| ||| || |||||||| ||||| ||||| |||||||||||| | ||| |||||||| ||||||||||| |
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| T |
19813128 |
attacctttattacacaacaattgagccagtttctctccaaacctacacacattcactataatgctgctatgagagt |
19813052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 14040708 - 14040776
Alignment:
| Q |
149 |
atcactcaacaattaagccaacttctcagcaaacctacacaaactcattataatgcagctatgagagtt |
217 |
Q |
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|||||||||||| | || ||| ||||||| ||||||||||| || ||||| ||||| ||| |||||||| |
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| T |
14040708 |
atcactcaacaacttagtcaatttctcagtaaacctacacatacccattacaatgctgctctgagagtt |
14040776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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