View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_high_48 (Length: 277)
Name: NF18156_high_48
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 47019039 - 47019284
Alignment:
| Q |
14 |
agatgtaggagttcatctcaaaactgggtaacctaatttcgtttatgtttttacaatttatgattcctatttcttgcttttatgcactcagttgattttc |
113 |
Q |
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| T |
47019039 |
agatgtaggagttcatctcaaaactgggtaacctaatttcgtttatgtttttacaatttatgattcctatttcttgcttttatgcactcagttgattttc |
47019138 |
T |
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| Q |
114 |
aatcaatcgacttgcattggcatctattatttttgttaaagttcaaaatagtttctgttgtaaatcatgatccaacatcaataaagtttgattttgaaca |
213 |
Q |
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| T |
47019139 |
aatcaatcgacttgcattggcatc---tatttttgttaaagttcaacatagtttctgttgtaaatcatgatccaacatcaataaagtttgattttgaaca |
47019235 |
T |
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| Q |
214 |
gaaaaaacaattttggtttgtggcatctcaaaatgaaagtgtttctcat |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47019236 |
gaaaaaacaattttggtttgtggcatctcaaaatgaaagtgtttctcat |
47019284 |
T |
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