View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_high_5 (Length: 662)
Name: NF18156_high_5
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 629; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 1 - 645
Target Start/End: Complemental strand, 29122057 - 29121414
Alignment:
| Q |
1 |
tctttactgaaaaaatgattaaagaactttaaatttcaccattcatcgatatgtactaaagtttaagttcagtagaatacttggtatcaatcttgaccaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29122057 |
tctttactgaaaaaatgattaaagaactttaaatttcaccattcatcgatatgtactaaagtttaagttcagtagaatacttggtatcaatcttgaccaa |
29121958 |
T |
|
| Q |
101 |
gaaatggaaaacctataggcatcgaggcctgtttcaaccatgagttgcacatcttcctgcattaaaagatgaatcagaaagaatgcattatcggacaaaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
29121957 |
gaaatggaaaacctataggcatcgaggcctgtttcaaccatgagttgcacatcttcctgcattaaaagatgaatcagaaagaatgcattaccggacaaaa |
29121858 |
T |
|
| Q |
201 |
ttagaaagatagaagccttgtgtcttgtttaccttgtatttgtggtacgtgtcgcaggctacatctccatttcctccacgcgcaaaccctttttgtataa |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121857 |
ttagaaagatagaagccttgtgtcttgtttaccttgtatttgtggtacgtgtcgcaggctacatctccatttcctccacgcgcaaaccctttttgtataa |
29121758 |
T |
|
| Q |
301 |
aaatgctagtcatgagaattggtttataacgctcaagtaaaaaatgcactgttaaattgtaaatactataacatattcccagtttctcattgattttcac |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121757 |
aaatgctagtcatgagaattggtttataacgctcaagtaaaaaatgcactgttaaattgtaaatactataacatattcccagtttctcattgattttcac |
29121658 |
T |
|
| Q |
401 |
ttcaggaaaaagttggaatgaaaatgataattttgttgtgatccagatccaattatccaataacttgattaaagtgagtgaaggctcatcaaagcatgac |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121657 |
ttcaggaaaaagttggaatgaaaatgataattttgttgtgatccagatccaattatccaataacttgattaaagtgagtgaaggctcatcaaagcatgac |
29121558 |
T |
|
| Q |
501 |
ttttttattgaacacattttctaaagtaaaaatatttaaaaatgattattacagttaccatagtctctaaaagaatttgatttgaactatgtctctaaaa |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121557 |
ttttttattgaacacattttctaaagtaaaaatatttaaaaatgattattacagttaccatagtctctaaaagaatttgatttgaactatgtctctaaaa |
29121458 |
T |
|
| Q |
601 |
tgataagatggatgatagaaaggaattgactaaccagcatgtgca |
645 |
Q |
| |
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|||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
29121457 |
tgataagatggatgatag-aatgaattgactaaccagcatgtgca |
29121414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 302; Significance: 1e-169; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 39630901 - 39630485
Alignment:
| Q |
1 |
tctttactgaaaaaatgattaaagaactttaaatttcaccattcatcgatatgtactaaagttt-aagttcagtagaatacttggtatcaatcttgacca |
99 |
Q |
| |
|
|||||||||||||| | |||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
39630901 |
tctttactgaaaaattaattaaagaacgttaaatttcatcattcatcgatatgtactaaagttttaagttcagttaaatacttggtatcaatcttgacca |
39630802 |
T |
|
| Q |
100 |
agaaatggaaaacctataggcatcgaggcctgtttcaaccatgagttgcacatcttcctgcattaaaagatgaatcagaaagaatgcattatcggacaaa |
199 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | || ||| |
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| T |
39630801 |
agaaatggaaaacctataggcatcaaggcctgtttcaaccatgagctgcacatcttcctgcattaaaagatgaatcagaaagaatgcattaccagataaa |
39630702 |
T |
|
| Q |
200 |
attagaaagatagaagccttgtgtcttgtttaccttgtatttgtggtacgtgtcgcaggctacatctccatttcctccacgcgcaaaccctttttgtata |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39630701 |
attagaaagatagaagccttgtgtcttgtttaccttgtatctgtggtacgtgtcgcaggctacatctccatttcctccacgcgcaaaccctttttgtata |
39630602 |
T |
|
| Q |
300 |
aaaatgc--tagtcatgagaattggtttataacgctc-aagtaaaaaatgcactgttaaattgtaaatactataacatattcccagtttctcattgattt |
396 |
Q |
| |
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||||||| ||||||||||| ||||||||||| |||| ||||||||| || | |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39630601 |
aaaatgctatagtcatgagagttggtttataatgctcaaagtaaaaactgaatatttaaattgtaaatactataacatattcccagtttctcactgattt |
39630502 |
T |
|
| Q |
397 |
tcacttcaggaaaaagt |
413 |
Q |
| |
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|| |||||| ||||||| |
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| T |
39630501 |
tcgcttcagaaaaaagt |
39630485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 39641686 - 39641259
Alignment:
| Q |
1 |
tctttactgaaaaaatgattaaagaactttaaatttcaccattcatcgatatgtactaaagtttaagttcagtagaatacttggtatcaatcttgaccaa |
100 |
Q |
| |
|
|||| ||||||||||| |||||||||| | |||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39641686 |
tcttcactgaaaaaataattaaagaacgtcaaatttcaccattcatcgatctgtattaaagtttaagttcagtggaatacttggtatcaatcttgaccaa |
39641587 |
T |
|
| Q |
101 |
gaaatggaaaacctataggcatcgaggcctgtttcaaccatgagttgcacatcttcctgcattaaaagatgaatcagaaagaatgcattatcggacaaaa |
200 |
Q |
| |
|
||||||||||| |||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
39641586 |
gaaatggaaaatctataggcttcaagacctgtttcaaccatgagctgcacatcttcctgcattaaaagatgaatcataaagaatgcattactagacaaaa |
39641487 |
T |
|
| Q |
201 |
ttagaaagatagaagccttgtgtcttgtttaccttgtatttgtggtacgtgtcgcaggctacatctccatttcctccacgcgcaaaccctttttgtataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39641486 |
ttagaaagatagaagccttgtgtcttgtttaccttgtatttgtggtacgtgtcgcaggctacatctccatttcctccacgcgcaaaccctttttgtataa |
39641387 |
T |
|
| Q |
301 |
aaatgctagtcatgagaattggtttataacgctc-------------aagtaaaaaatgcactgttaaattgtaaatactataacatattcccagtttct |
387 |
Q |
| |
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||||||||||| | ||||||||||||||| |||| ||||||||| || | ||||||||||||||||| ||||||||||||||||||| |
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| T |
39641386 |
aaatgctagtcgttagaattggtttataatgctcaaagcaaatgaagaagtaaaaactgaaaagttaaattgtaaatact-taacatattcccagtttct |
39641288 |
T |
|
| Q |
388 |
cattgattttcacttcaggaaaaagttgg |
416 |
Q |
| |
|
||||||||||| |||||| |||| ||||| |
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|
| T |
39641287 |
cattgattttcgcttcagaaaaaggttgg |
39641259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 412 - 645
Target Start/End: Complemental strand, 39641180 - 39640954
Alignment:
| Q |
412 |
gttggaatgaaaatgataattttgttgtgatccagatccaattatccaataacttgattaaagtgagtgaaggctcatcaaagcatgacttttttattga |
511 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39641180 |
gttggaattaaaatgataattttgttgtgatcca------attatcaaataacttgattaaagtgagtgaaggctcatcaaagcatgacttttttattga |
39641087 |
T |
|
| Q |
512 |
acacattttctaaagtaaaaatatttaaaaatgattattacagttaccatagtctctaaaagaatttgatttgaactatgtctctaaaatgataagatgg |
611 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| ||||||||||||||| |
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| T |
39641086 |
acacgttttctaaagtaaaaatatttaaaaatgattattacagttaccatagtctctaaaaaaaattgatttgaactatgactcaaaaatgataagatgg |
39640987 |
T |
|
| Q |
612 |
atgatagaaaggaattgactaaccagcatgtgca |
645 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| |
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|
| T |
39640986 |
atgatag-aatgaattgactaaccagcatgtgca |
39640954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 597 - 645
Target Start/End: Complemental strand, 39630331 - 39630284
Alignment:
| Q |
597 |
aaaatgataagatggatgatagaaaggaattgactaaccagcatgtgca |
645 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
39630331 |
aaaatgataagatggatgatag-aatgaattgactaaccagcatgtgca |
39630284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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