View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_high_58 (Length: 235)
Name: NF18156_high_58
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_high_58 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 20135546 - 20135352
Alignment:
| Q |
21 |
acttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttgaggcgtcaaaatgagaatacgagcgtagtccaacct |
120 |
Q |
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| T |
20135546 |
acttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttgaggcatcaaaatgagaatacgagcgtagtccaacct |
20135447 |
T |
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| Q |
121 |
cgctctatccgccgtacattcatctaaatgaataaaccgtccaacaccattcacacacatcctgaagaaatcatcattccaagcatgtatgggaa |
215 |
Q |
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| T |
20135446 |
cgctctatccgccgtacattcatctaaatgaataaaccgtccaacacgattcacacacatcctgaagaaatcatcattccaagcatgtatgggaa |
20135352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 215
Target Start/End: Original strand, 44356525 - 44356719
Alignment:
| Q |
21 |
acttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttgaggcgtcaaaatgagaatacgagcgtagtccaacct |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44356525 |
acttaataaaatgcttgcgatcatcaatcaaaaattcaggagtcgaattcacgatttctatttgaggcatcaaaatgagaatacgagcgtagtccaacct |
44356624 |
T |
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| Q |
121 |
cgctctatccgccgtacattcatctaaatgaataaaccgtccaacaccattcacacacatcctgaagaaatcatcattccaagcatgtatgggaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44356625 |
cgctctatccgccgtacattcatctaaatgaataaaccgtccaacacgattcacacacatcctgaagaaatcatcattccaagcatgtatgggaa |
44356719 |
T |
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