View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_high_6 (Length: 623)
Name: NF18156_high_6
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 36365974 - 36365695
Alignment:
| Q |
9 |
acatcatcaaataaaagattaaactcttcagctacaatcaaaaacagaaaaggtgataaaggataaacccaatcttaaccctcgactcataataaattcg |
108 |
Q |
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| T |
36365974 |
acatcatcaaataacagattaaactcttctgccacaatcaaaaacagaaa-ggtgataaaggataaaccctgtcttaaccctcgactcataataaattcg |
36365876 |
T |
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| Q |
109 |
tttgtgggactatcattaatgagaattgagattgttgttgtcttaagacattctaacatccaatagctccattttaaagcaaaactcatccttttcaaaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36365875 |
tttgtgggactatcattaatgagaattgagattgttgttgtcttaagacattataacatccaatagctccattttaaagcaaaactcatcctttttaaaa |
36365776 |
T |
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| Q |
209 |
aagagtcaagataagaccaatttagagagtcataagga-ggacaagaggtagtgttgtctcaggatggttttggctatccc |
288 |
Q |
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| T |
36365775 |
tagagtcaagataagtccaatttacagagtcagaaggagggacaagaggtagtgttgtctcaggatggttttggttatccc |
36365695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 372 - 553
Target Start/End: Complemental strand, 36365609 - 36365422
Alignment:
| Q |
372 |
taattaatctactattgtagctttaactaccctagataagtttatgt--gaaaattattagtagaaatatgaaagacaaaattgtcatttgaaatgtaac |
469 |
Q |
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| T |
36365609 |
taattaatctactattgtagatttaactaccctagataagtttatctatgaaaattattagtagaaatatgaaagacaaaattgtcatttgaaatgtaac |
36365510 |
T |
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| Q |
470 |
ta----cacaaggagctttgtcaacaactaaaattatcaagataggattatatctatttaactgtttcaatgtatttggcccatcgta |
553 |
Q |
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| T |
36365509 |
taactacacaaggagctttgtcaacaactaaaattatcaagataggattatatctatttaactgtttcaatatatttggcccatcgta |
36365422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 554 - 607
Target Start/End: Complemental strand, 36365391 - 36365338
Alignment:
| Q |
554 |
tctcaaaatcaattttgaacatgattaaaccccacttatttttcttagcttcat |
607 |
Q |
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| T |
36365391 |
tctcaaaatcaattttgaacatgattaagccccacttatttttcttagcttcat |
36365338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 416 - 448
Target Start/End: Complemental strand, 36126514 - 36126482
Alignment:
| Q |
416 |
tgtgaaaattattagtagaaatatgaaagacaa |
448 |
Q |
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| T |
36126514 |
tgtgaaaattattattagaaatatgaaagacaa |
36126482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 17120877 - 17120931
Alignment:
| Q |
175 |
ctccattttaaagcaaaactcatccttttcaaaaaagagtcaagataagaccaat |
229 |
Q |
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| T |
17120877 |
ctccattttaaaggaaaatccatcattttcaaaatagagtcaagataagaccaat |
17120931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 448
Target Start/End: Complemental strand, 42172412 - 42172380
Alignment:
| Q |
416 |
tgtgaaaattattagtagaaatatgaaagacaa |
448 |
Q |
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| T |
42172412 |
tgtgaaaattattagtagaaatatgaaagacaa |
42172380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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