View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_high_63 (Length: 232)
Name: NF18156_high_63
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_high_63 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 42287288 - 42287496
Alignment:
| Q |
18 |
ctgaatatgaaattattcagagcctttttaattctcactctc---------ttcaccacgttaccatctgctgaggttgtttcaccaattcttgatgttt |
108 |
Q |
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| T |
42287288 |
ctgaatatgaaattattcagagcctttttaattctcactctcttcaatctcttcaccacgttaccatctgctgaggttgtttcaccaattcttgatgttt |
42287387 |
T |
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| Q |
109 |
cttcacttaatcgaactagttttcctacaaacttcatttttgggacagcatcctcagcataccaggta-ctcattatttcaatgagaccttcttacagat |
207 |
Q |
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| T |
42287388 |
cttcacttaatcgaactagttttcctacaaacttcatttttgggacagcatcctcagcataccaggtacctcattatttcaatgagaccttcttacagat |
42287487 |
T |
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| Q |
208 |
ttgaattca |
216 |
Q |
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||||||||| |
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| T |
42287488 |
ttgaattca |
42287496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 81 - 176
Target Start/End: Complemental strand, 42159767 - 42159672
Alignment:
| Q |
81 |
gaggttgtttcaccaattcttgatgtttcttcacttaatcgaactagttttcctacaaacttcatttttgggacagcatcctcagcataccaggta |
176 |
Q |
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| T |
42159767 |
gaggctgtttcaccaattcttgatgtttcttcacttaatcgaactagttttcccacaagcttcatttttgggacagggtcctcatcataccaggta |
42159672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 42169989 - 42169842
Alignment:
| Q |
29 |
attattcagagcctttttaattctcactctcttcaccacgttaccatctgctgaggttgtttcaccaattcttgatgtttcttcacttaatcgaactagt |
128 |
Q |
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| T |
42169989 |
attattcagagagcttttcattctcactctcttcatcacactatcatttgcagaggttgtttcaccaattcttgatgtttcctcactcaatcgaactagc |
42169890 |
T |
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| Q |
129 |
tttcctacaaacttcatttttgggacagcatcctcagcataccaggta |
176 |
Q |
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| T |
42169889 |
tttccaaccggcttcatttttgggacagcatcatcatcataccaggta |
42169842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 216
Target Start/End: Complemental strand, 42159622 - 42159582
Alignment:
| Q |
177 |
ctcattatttcaatgagaccttcttac-agatttgaattca |
216 |
Q |
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| T |
42159622 |
ctcattatttcaatgagaccttcttacaagatttgaattca |
42159582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 30358440 - 30358519
Alignment:
| Q |
96 |
attcttgatgtttcttcacttaatcgaactagttttcctacaaacttcatttttgggacagcatcctcagcataccaggt |
175 |
Q |
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||||| |||||| ||||| | ||||||| ||||||||||||||||||||| ||||| || || ||| ||||||||||| |
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| T |
30358440 |
attctcgatgttacttcattaaatcgaagtagttttcctacaaacttcatctttggagcatcaaactcggcataccaggt |
30358519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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