View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18156_high_66 (Length: 222)
Name: NF18156_high_66
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_high_66 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 3565659 - 3565468
Alignment:
| Q |
15 |
tcataggaaagttctacatagaatgtaaagtcttttctttcaactaacattttgtgtcttaaaggttgggaaatatcaagatctactaagactctagcct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3565659 |
tcataggaaagttctacatagaatgtaaaaccttttctttcaactaacattttgtgtcttaaaggttgggaaatatcaagatctactaagactctagcct |
3565560 |
T |
|
| Q |
115 |
aatatccaaaggttctttcatagataagtttggttgtggcagaatcagtgaaaattggcgaaccagcaccactagctattgagaataaaatg |
206 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3565559 |
aatatccaaaggttctttcatacataagtttggctgtggtagaatcagtgaaaattggcgaaccagcaccactagctattgagaataaaatg |
3565468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University