View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18156_low_1 (Length: 997)
Name: NF18156_low_1
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 864; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 864; E-Value: 0
Query Start/End: Original strand, 8 - 980
Target Start/End: Original strand, 14340243 - 14341215
Alignment:
| Q |
8 |
gtgagatgaaaaagaagtgaatggtgaaaaactgaacctatatatgtgatgttatttatagggacagaaccacctctcagaagtggccttccaaggattg |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340243 |
gtgacatgaaaaagaagtgaatggtgaaaaactgaacctatatatgtgatgttatttatagggacagaaccacctctcagaagtggccttccaaggattg |
14340342 |
T |
|
| Q |
108 |
aagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340343 |
aagatttctcaaaagccatttacaccattgatattggacaaaatgatattagctatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtc |
14340442 |
T |
|
| Q |
208 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttgatgcattattatcaagtttggcaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
14340443 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtgataattagcaaccaaagaaattaagcctcgttgatgcattattatcaagtttggcga |
14340542 |
T |
|
| Q |
308 |
ttggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaattgattttcattannnnnnnnnnnnnn-caacacttgca |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14340543 |
ttggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaattgattttcattattttttttcctttttcaacacttgca |
14340642 |
T |
|
| Q |
407 |
tgtcatctggttcaatcatgggttgagtcgataaaaccaattgaaccaacagagatataaccggttcaatatccaatccaactattatatagcaatttgg |
506 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
14340643 |
tgtcatctggttcaatcatgg-ttgagtcgataaaaacaattgaaccaacggagatataaccggttcaatatccaatccaattattatatagcaacttgg |
14340741 |
T |
|
| Q |
507 |
ttatagaactaatacttgtcattcctatggtttagagattatacaatcatggagcaagagtgttttggattcacaatacaggtcctattggatgtatacc |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340742 |
ttatagaactaatacttgtcattcctatggtttagagattatacaatcaaggagcaagagtgttttggattcacaatacaggtcctattggatgtatacc |
14340841 |
T |
|
| Q |
607 |
ctattattacttcttttatccacacaagaacgagaagagtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacagg |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340842 |
ctattattacttcttttatccacacaagaacgagaagagtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacagg |
14340941 |
T |
|
| Q |
707 |
cagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatg |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340942 |
cagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatg |
14341041 |
T |
|
| Q |
807 |
caaggagccaaggtaattatgttcaattaagtttttgttatctttaaattatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttgc |
906 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14341042 |
caaggagccaaggtaattatgttcaattaagtttttgttatctttaaatgatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttgc |
14341141 |
T |
|
| Q |
907 |
atgatttgtggcaggttttataaatccattggaattttgttgtggaagttaccaaggtaacgaaatacattatt |
980 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14341142 |
atgatttgtggcaggttttatgaatccattggaattttgttgtggaagttaccaaggtaacgaaatacattatt |
14341215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 770; E-Value: 0
Query Start/End: Original strand, 8 - 980
Target Start/End: Original strand, 3601373 - 3602332
Alignment:
| Q |
8 |
gtgagatgaaaaagaagtgaatggtgaaaaactgaacctatatatgtgatgttatttatagggacagaaccacctctcagaagtggccttccaaggattg |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
3601373 |
gtgacatgaaaaagaagtgaatggtgaaaaactgaacctat----gtgatgtcatttatagggacagaaccacctctcagaagtggcgttccaaggactg |
3601468 |
T |
|
| Q |
108 |
aagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3601469 |
aagatttctcaaaagccatttacaccattgatattggacaaaatgatattggctatggtctgcagaagccgaactcttcagaggaagaagttagaaggtc |
3601568 |
T |
|
| Q |
208 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttgatgcattattatcaagtttggcaa |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3601569 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttgatgcattattatcaagtttggcaa |
3601668 |
T |
|
| Q |
308 |
ttggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaattgattttcattannnnnnnnnnnnnncaacacttgcat |
407 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3601669 |
ttggtttgattccagttacattgtagtatgattgaaccaagttgaaccggtattggtttaattgattttcattattttttccttttt-caacacttg--- |
3601764 |
T |
|
| Q |
408 |
gtcatctggttcaatcatgggttgagtcgataaaaccaattgaaccaacagagatataaccggttcaatatccaatccaactattatatagcaatttggt |
507 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3601765 |
-tcatctggttcaatcatgg-ttgagtcgataaaaccaattgaaacaacggagatataaccggttcaatatccaatccaatcattatatagcaatttggt |
3601862 |
T |
|
| Q |
508 |
tatagaactaatacttgtcattcctatggtttagagattatacaatcatggagcaagagtgttttggattcacaatacaggtcctattggatgtataccc |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| | | ||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
3601863 |
tatagaactaatacttgtcattcctatggtttagaaattatacaatgaagaggcaagagtgttttggattcacaacacaggtcctattgaatgtataccc |
3601962 |
T |
|
| Q |
608 |
tattattacttcttttatccacacaagaacgagaagagtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacaggc |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3601963 |
tattattacttcttttatccacacaagaacgagaagggtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacaggc |
3602062 |
T |
|
| Q |
708 |
agctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgc |
807 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3602063 |
agctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacggtcaaatatacacttatcagcaatgc |
3602162 |
T |
|
| Q |
808 |
aaggagccaaggtaattatgttcaattaagtttttgttatctttaaattatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttgca |
907 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3602163 |
aaggaaccaaggta---atgttcaattaagtttttgttatctttaaaatatcaattgcttattgaatgtgcacaattaagttttaacttttatgcttgca |
3602259 |
T |
|
| Q |
908 |
tgatttgtggcaggttttataaatccattggaattttgttgtggaagttaccaaggtaacgaaatacattatt |
980 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3602260 |
tgatttgtggcaggttttgtgaatccattggaattttgttgtggaagttaccaaggtaacgaaatacattatt |
3602332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 274 - 812
Target Start/End: Original strand, 3590710 - 3591225
Alignment:
| Q |
274 |
agccttgttgatgcattattatcaagtttggcaattggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaattgat |
373 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||| |||| |||| |||| ||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
3590710 |
agccttgttgatacattattattaagtttggcaattggtttgtttcctgttacattgcagtatgattgaactaagttgaaccggtattggtttaattgat |
3590809 |
T |
|
| Q |
374 |
tttcattannnnnnnnnnnnnncaacacttgcatgtcatctggttcaatcatgggttgagtcgataaaaccaattgaaccaacagagatataaccggttc |
473 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||||| | ||||||| |
|
|
| T |
3590810 |
tttcatttttttttcaattttt-aacacttg----tcatctggttcaatcatgg-ttgagccgataaaaccaatcgaaccaacacccgga---ccggttc |
3590900 |
T |
|
| Q |
474 |
aatatccaatccaactattatatagcaatttggttatagaactaatacttgtcattcctatggtttagagattatacaatcatggagcaagagtgttttg |
573 |
Q |
| |
|
||| |||||||||| |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||||||| | || |||||||||||||| |
|
|
| T |
3590901 |
aatctccaatccaattattatatagcattttggttatagaactaatagttgtcattcttatggtttagaaattatacaatgaaggggcaagagtgttttg |
3591000 |
T |
|
| Q |
574 |
gattcacaatacaggtcctattggatgtataccctattattacttcttttatccacacaagaacgagaagagtaacttggatgccaatggctgtgttaaa |
673 |
Q |
| |
|
|||||||||||||||||||||||||||| | || ||||| ||||||||||||||| | ||||||| ||||||||||||||||||||| |
|
|
| T |
3591001 |
gattcacaatacaggtcctattggatgttcatcc--------cttctattatccacacaagaagg------gtaacttagatgccaatggctgtgttaaa |
3591086 |
T |
|
| Q |
674 |
cctcacaacgagcttgctcaggaatataacaggcagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatg |
773 |
Q |
| |
|
|||||||| |||||||||| ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3591087 |
cctcacaataagcttgctcaagaatataactggtagctaaaagaccaagtgtttcagctaaggagaaagtttccattagccaaatttacatatgttgatg |
3591186 |
T |
|
| Q |
774 |
tttacacagtcaaatatacacttatcagcaatgcaagga |
812 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
3591187 |
tttacacagtaaaatataaacttatcagcaacgcaagga |
3591225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 462 - 823
Target Start/End: Original strand, 3568817 - 3569173
Alignment:
| Q |
462 |
tataaccggttcaatatccaatccaactattatatagcaatttggttatagaac-----taatacttgtcattcctatggtttagagattatacaatcat |
556 |
Q |
| |
|
|||||| ||| |||| |||||||||| |||||||||||||||||||| |||||| |||||||||||||| || || |||||| | |||| | |
|
|
| T |
3568817 |
tataacaggtacaatctccaatccaattattatatagcaatttggttttagaacagaactaatacttgtcattactctgttttaga---ttcacaacgaa |
3568913 |
T |
|
| Q |
557 |
ggagcaagagtgttttggattcacaatacaggtcctattggatgtataccctattattacttcttttatccacacaagaacgagaagagtaacttggatg |
656 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||||||| |||||||| || || ||| ||||||||||||||| | ||| |||||||| |
|
|
| T |
3568914 |
cgggcaagagtgttttcgattcacaatacaggtcctattggatgcttaccctatgataacatctattatccacacaagaaggggaa------cttggatg |
3569007 |
T |
|
| Q |
657 |
ccaatggctgtgttaaacctcacaacgagcttgctcaggaatataacaggcagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaa |
756 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
3569008 |
ccaatggttgttttaaacctcacaacgagcttgctcaggaatagaacaggcagctaaaagac-aagcgtttcagctaaggagaaagtttccattagccaa |
3569106 |
T |
|
| Q |
757 |
atttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggtaat |
823 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | |||||||||||| ||||||||||| |||||| |
|
|
| T |
3569107 |
atttacatatgttgatgtttacacagtaaaatagaaacttatcagcaacgcaaggagccagggtaat |
3569173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 98 - 369
Target Start/End: Original strand, 3568467 - 3568732
Alignment:
| Q |
98 |
ccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggtctgcagaagccgaactcttcagaggaagaag |
197 |
Q |
| |
|
||||||| | |||||||||| || ||||||||||| |||||||||| ||||||||||||||| | ||||||||||||| |||||||||||| ||| |
|
|
| T |
3568467 |
ccaaggactaaagatttctctaaggccatttacacaattgatattgcacaaaatgatattggctttggtctgcagaag------tcttcagaggaacaag |
3568560 |
T |
|
| Q |
198 |
ttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagcaaccaaagaaattaagccttgttgatgcattattatca |
297 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3568561 |
ttagaaggtcaattcctgacatcttgagccaattctcccaagcagtgcaggtaattagcaaccaccaaagaaattaagccttgttgatgcattattatca |
3568660 |
T |
|
| Q |
298 |
agtttggcaattggtttgattccagttatattgtagtatgattgaaccaagtggaaccggtattggtttaat |
369 |
Q |
| |
|
||||||||||||||||||||| | |||| |||| |||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
3568661 |
agtttggcaattggtttgattacggttacattgcagtatgattgcaccaagttgaacatctattggtttaat |
3568732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 875 - 958
Target Start/End: Original strand, 3569487 - 3569570
Alignment:
| Q |
875 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttataaatccattggaattttgttgtggaagttac |
958 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||| |||| || | ||||||||||||||||| |||||||||||| |
|
|
| T |
3569487 |
gtgcacaattaagttttaatttttaatcttgcatgatttgtggtaggtcttgtgaatccattggaattttgctgtggaagttac |
3569570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 875 - 958
Target Start/End: Original strand, 3577213 - 3577296
Alignment:
| Q |
875 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttataaatccattggaattttgttgtggaagttac |
958 |
Q |
| |
|
||||||| |||||| |||| |||||| |||||| |||||||||| |||||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
3577213 |
gtgcacagttaagtgttaatttttattcttgcacgatttgtggctggttttgtaaatccattgaaattttgctgtggaagttac |
3577296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 3590634 - 3590708
Alignment:
| Q |
178 |
gaactcttcagaggaagaagttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaat |
252 |
Q |
| |
|
|||| ||||| ||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3590634 |
gaacacttcaaaggaacaagttagaaggtcatttcctgatatcttgagccaattcttccaagcagtgcaggtaat |
3590708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 875 - 958
Target Start/End: Original strand, 3591554 - 3591637
Alignment:
| Q |
875 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttataaatccattggaattttgttgtggaagttac |
958 |
Q |
| |
|
||||||| |||||| |||| |||||| |||||| ||||||||||||||||| | ||||||||| ||| || ||||||| |||| |
|
|
| T |
3591554 |
gtgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattgaaatatttctgtggaaattac |
3591637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 7e-95; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 407 - 823
Target Start/End: Original strand, 1409169 - 1409581
Alignment:
| Q |
407 |
tgtcatctggttcaatcatgggttgagtcgataaaaccaattgaaccaaca----gagatataaccggttcaatatccaatccaactattatatagcaat |
502 |
Q |
| |
|
||||||||||||||||| ||| | | | |||||||||||||||||||| | ||| | |||||| |||||| | || ||| |||||||||||||||| |
|
|
| T |
1409169 |
tgtcatctggttcaatcgtggttcaact-gataaaaccaattgaaccaagactcggaggtttaaccg-ttcaatcttcagtccgactattatatagcaat |
1409266 |
T |
|
| Q |
503 |
ttggttatagaactaatacttgtcattcctatggtttagagattatacaatcatggagcaagagtgttttggattcacaatacaggtcctattggatgta |
602 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||| ||||| | | |||||| | || |||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
1409267 |
ttggttttagaactaatacttgtcattactatgttttagcaactctacaatgaaggggcaagagtgttttggattcacaatgtaggtccaattggatgct |
1409366 |
T |
|
| Q |
603 |
taccctattattacttcttttatccacacaagaacgagaagagtaacttggatgccaatggctgtgttaaacctcacaacgagcttgctcaggaatataa |
702 |
Q |
| |
|
| |||||| || || ||| ||||||||||||||| | |||||||||||| | |||||||||||| ||||||||| ||||||||||| |||||||| |
|
|
| T |
1409367 |
tgccctataataacatctattatccacacaagaagg------gtaacttggatgtctatggctgtgttatacctcacaatgagcttgctcaagaatataa |
1409460 |
T |
|
| Q |
703 |
caggcagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagc |
802 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| ||||||| |||||||| |||||| ||| |
|
|
| T |
1409461 |
caggcagctaaaagacaaagtgtttcagctaaggcgaaagtttccattagccaagtttacatatgttgatgtgtacacagccaaatataaacttattagc |
1409560 |
T |
|
| Q |
803 |
aatgcaaggagccaaggtaat |
823 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
1409561 |
aatgcaaagagccaaggtaat |
1409581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 61 - 283
Target Start/End: Original strand, 1408690 - 1408906
Alignment:
| Q |
61 |
atttatagggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggt |
160 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||| |||||||||| ||| || ||||| || ||| ||||||| ||||||||||||||||||||| ||| |
|
|
| T |
1408690 |
atttatagggacagaatcacctttcaaaagtggtcttccaaggaatgaggaattctctaaggccctttacacaattgatattggacaaaatgatcttgcc |
1408789 |
T |
|
| Q |
161 |
tatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaataattagca |
260 |
Q |
| |
|
|||| | ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | |
|
|
| T |
1408790 |
attggtttacagaa------cacttcagaggaacaagttaaaaggtcaattcctgatatcttgagccaattctcccaagcagtgcaggtaatttgtaacc |
1408883 |
T |
|
| Q |
261 |
accaaagaaattaagccttgttg |
283 |
Q |
| |
|
|||||||| |||||||||||||| |
|
|
| T |
1408884 |
accaaagatattaagccttgttg |
1408906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 67 - 252
Target Start/End: Original strand, 1416682 - 1416861
Alignment:
| Q |
67 |
agggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggt |
166 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||||||| ||| |||||||| || ||| ||||||| ||||||||||||||||||||| ||| | ||||| |
|
|
| T |
1416682 |
agggacagaaccatctctcaaaagtggtcttccaaggcctgaggatttctctaaggccctttacacaattgatattggacaaaatgatcttgctcatggt |
1416781 |
T |
|
| Q |
167 |
ctgcagaagccgaactcttcagaggaagaagttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaat |
252 |
Q |
| |
|
| || || ||||||||||| ||||| |||||||||||||||| || |||||| | ||| ||||| ||||| ||||||| |
|
|
| T |
1416782 |
tttca------atacacttcagaggaacaagttcaaaggtcaattcctgaaatattgagcaatttctcccaatcagtgaaggtaat |
1416861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 560 - 820
Target Start/End: Original strand, 1412370 - 1412624
Alignment:
| Q |
560 |
gcaagagtgttttggattcacaatacaggtcctattggatgtataccctattattacttcttttatccacacaagaacgagaagagtaacttggatgcca |
659 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| |||||||| | |||| ||||||||| |||| |||||||| | ||||| | || |||| |
|
|
| T |
1412370 |
gcaagagtgttctggatacacaatacaggtccaattggatgcttgcccttcaattacttctcttatgagcacaagaagg------gtaacctagacgcca |
1412463 |
T |
|
| Q |
660 |
atggctgtgttaaacctcacaacgagcttgctcaggaatataacaggcagctaaaagaccaagtgtttcagctaaggagaatgtttccattagccaaatt |
759 |
Q |
| |
|
|||||||||| |||||||| ||| | | ||||| |||| ||||| | ||||||| |||||||||| | | |||||||||| | | | |||||||| |
|
|
| T |
1412464 |
atggctgtgtgaaacctcagaacaaaatagctcaagaatttaacaagaagctaaaggaccaagtgtcttatctaaggagaaaactcctacaggccaaatt |
1412563 |
T |
|
| Q |
760 |
tacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggt |
820 |
Q |
| |
|
||||||||||||| | |||| || ||||||| ||| ||||||||||||||||||| |||| |
|
|
| T |
1412564 |
tacatatgttgatatgtacaaagccaaatatgaactaatcagcaatgcaaggagccgaggt |
1412624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 67 - 252
Target Start/End: Original strand, 1411832 - 1412011
Alignment:
| Q |
67 |
agggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggt |
166 |
Q |
| |
|
|||||| ||||| ||||||| |||||| |||||| || ||| || ||||| || ||| ||||||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
1411832 |
agggacggaaccgcctctcaaaagtggtcttccagggcctgaggacttctctaaggccctttacacaattgatattggacaaaatgatcttgcctatggt |
1411931 |
T |
|
| Q |
167 |
ctgcagaagccgaactcttcagaggaagaagttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaat |
252 |
Q |
| |
|
| | | | || ||||||| ||| ||||| |||||||||||||||| || ||||||||||| ||||||||||| ||||||| |
|
|
| T |
1411932 |
tttc----gac--acacttcagaagaacaagttcaaaggtcaattcctgaaatattgagccaattgtcccaagcagtgaaggtaat |
1412011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 875 - 958
Target Start/End: Original strand, 1409817 - 1409896
Alignment:
| Q |
875 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttataaatccattggaattttgttgtggaagttac |
958 |
Q |
| |
|
||||||||||| ||||||||| | ||||||| |||||||||||||||| | ||||||||||||||||| |||||||||||| |
|
|
| T |
1409817 |
gtgcacaattaggttttaactctcatgcttg----atttgtggcaggttttgtgaatccattggaattttgctgtggaagttac |
1409896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 752 - 820
Target Start/End: Original strand, 1417191 - 1417259
Alignment:
| Q |
752 |
gccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggt |
820 |
Q |
| |
|
||||||||||||||||||||| | |||| || |||| || ||| ||||||||||||| |||||||||| |
|
|
| T |
1417191 |
gccaaatttacatatgttgatatgtacaaagccaaacatgaactaatcagcaatgcaaagagccaaggt |
1417259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 752 - 820
Target Start/End: Original strand, 1421679 - 1421747
Alignment:
| Q |
752 |
gccaaatttacatatgttgatgtttacacagtcaaatatacacttatcagcaatgcaaggagccaaggt |
820 |
Q |
| |
|
||||||||||||||||||||| | |||| || |||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
1421679 |
gccaaatttacatatgttgatatgtacaaagctaaatatgaactaatcagcaatgcaaagagccaaggt |
1421747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 1409071 - 1409118
Alignment:
| Q |
309 |
tggtttgattccagttatattgtagtatgattgaaccaagtggaaccg |
356 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| |||||| |
|
|
| T |
1409071 |
tggtttgattccgattatattgcagtatgattgaaccaagttgaaccg |
1409118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 1421141 - 1421228
Alignment:
| Q |
67 |
agggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgat |
154 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||||||| ||| || |||| | ||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
1421141 |
agggacagaaccatctctcaaaagtggtcttccaaggcctgaggacttctgtacggccctttacacaattgatattggactaaatgat |
1421228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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