View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_low_10 (Length: 599)
Name: NF18156_low_10
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 20 - 592
Target Start/End: Complemental strand, 53587285 - 53586713
Alignment:
| Q |
20 |
cggtgttggtgggcccatgagagctatcgcgtctcactcacgcgctaacgttgtaggtatcacgatcaacgagtatcaagtgaatcgtgcaaaattacac |
119 |
Q |
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| T |
53587285 |
cggtgttggtgggcccatgagagctatcgcgtctcactcacgcgctaacgttgtaggtatcacgatcaacgagtatcaagtgaatcgtgcaaaattacac |
53587186 |
T |
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| Q |
120 |
aacaaaaaagctggtttagattctctatgcgatgttgtttgtggtaattttctgaagatgccgtttcccagtaacagcttcgacggcgcgtattcaattg |
219 |
Q |
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| T |
53587185 |
aacaaaaaagctggtttagattctctatgcgatgttgtttgtggtaattttctgaagatgccgtttcccagtaacagcttcgacggcgcgtattcaattg |
53587086 |
T |
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| Q |
220 |
aagccacgtgccacgcgcctagtctcgaagaagtttacgctgaaatttttagggttttgaaacctggtgctctttacgtttcatatgaatgggttactac |
319 |
Q |
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| T |
53587085 |
aagccacgtgccacgcgcctaatctcgaagaagtttacgctgaaatttttagggttttgaaacctggtgctctttacgtttcatatgaatgggttactac |
53586986 |
T |
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| Q |
320 |
tgagaaatttgtagctgaaaacgctgaacatgttgagattattcaagggattgaaagaggtgatgctcttcctgggcttagaacctacgcagatatagct |
419 |
Q |
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| T |
53586985 |
tgagaaatttgtagctgaaaacgctgaacatgttgagattattcaagggattgaaagaggtgatgctcttcctgggcttagaacctacgcagatatagct |
53586886 |
T |
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| Q |
420 |
gaagcggctaagaaggttgggtttgaggttgttaaggaacgggatctggctcagccaccgtctcatccatggtggacccgtttgaaaatgggtaggattg |
519 |
Q |
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| T |
53586885 |
gaagcggctaagaaggttgggtttgaggttgttaaggaacgggatctggctcagccaccgtctcatccatggtggacccgtttgaaaatgggtaggattg |
53586786 |
T |
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| Q |
520 |
cttattggcgtaaccatattgtggtaacggttctgtctgctttgggaattgcacctaaaggaactgatgatgt |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
53586785 |
cttattggcgtaaccatattgtggtaacggttctgtctgctttgggaattgcacctaaaggaaccgttgatgt |
53586713 |
T |
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