View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18156_low_11 (Length: 597)

Name: NF18156_low_11
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18156_low_11
NF18156_low_11
[»] chr5 (7 HSPs)
chr5 (212-559)||(18313456-18313799)
chr5 (364-550)||(34378170-34378357)
chr5 (364-555)||(18593315-18593507)
chr5 (364-526)||(698433-698596)
chr5 (93-175)||(18313795-18313877)
chr5 (17-81)||(18313912-18313976)
chr5 (420-555)||(7161833-7161969)
[»] chr3 (14 HSPs)
chr3 (364-527)||(31482956-31483119)
chr3 (364-550)||(34475578-34475763)
chr3 (354-555)||(47235761-47235962)
chr3 (354-550)||(45163918-45164114)
chr3 (354-555)||(20611846-20612046)
chr3 (354-555)||(2392323-2392524)
chr3 (373-528)||(53247981-53248138)
chr3 (364-528)||(17551029-17551189)
chr3 (401-555)||(2394087-2394242)
chr3 (356-550)||(43012440-43012634)
chr3 (356-550)||(19176567-19176763)
chr3 (453-550)||(30352263-30352359)
chr3 (510-558)||(45399015-45399063)
chr3 (354-474)||(40023472-40023590)
[»] chr7 (13 HSPs)
chr7 (364-555)||(47325702-47325894)
chr7 (364-555)||(44353380-44353573)
chr7 (364-528)||(5860132-5860297)
chr7 (364-547)||(38306333-38306517)
chr7 (364-555)||(37795061-37795253)
chr7 (364-550)||(3419477-3419665)
chr7 (364-550)||(10244254-10244441)
chr7 (354-528)||(25160878-25161048)
chr7 (423-528)||(31971978-31972084)
chr7 (422-550)||(3867246-3867375)
chr7 (373-474)||(33435191-33435291)
chr7 (354-474)||(34390025-34390143)
chr7 (356-506)||(41089614-41089764)
[»] chr2 (4 HSPs)
chr2 (364-550)||(10524173-10524359)
chr2 (364-541)||(39338696-39338874)
chr2 (364-555)||(17116696-17116889)
chr2 (379-528)||(387262-387411)
[»] chr8 (13 HSPs)
chr8 (364-555)||(20138498-20138691)
chr8 (364-555)||(9519571-9519764)
chr8 (365-555)||(31207179-31207370)
chr8 (364-527)||(12898120-12898283)
chr8 (364-550)||(37986680-37986867)
chr8 (364-550)||(24995216-24995404)
chr8 (364-528)||(32066139-32066304)
chr8 (364-550)||(41893224-41893410)
chr8 (364-470)||(16457364-16457470)
chr8 (364-526)||(34388852-34389014)
chr8 (395-474)||(22773602-22773681)
chr8 (364-461)||(36630909-36631006)
chr8 (496-555)||(16457292-16457351)
[»] chr1 (10 HSPs)
chr1 (354-555)||(24449747-24449948)
chr1 (364-555)||(46692636-46692828)
chr1 (364-555)||(5459233-5459425)
chr1 (364-523)||(31585608-31585769)
chr1 (364-550)||(5389244-5389430)
chr1 (365-526)||(41920525-41920692)
chr1 (365-479)||(30685798-30685912)
chr1 (399-529)||(6764224-6764355)
chr1 (357-461)||(24684390-24684493)
chr1 (510-555)||(32882585-32882630)
[»] chr4 (6 HSPs)
chr4 (364-528)||(8255099-8255264)
chr4 (364-528)||(8268517-8268682)
chr4 (364-460)||(30964513-30964609)
chr4 (364-524)||(30167412-30167573)
chr4 (364-518)||(4305797-4305951)
chr4 (510-559)||(31050474-31050523)
[»] scaffold0343 (1 HSPs)
scaffold0343 (364-528)||(5777-5943)
[»] scaffold0068 (1 HSPs)
scaffold0068 (354-506)||(35640-35790)
[»] chr6 (3 HSPs)
chr6 (364-527)||(3117565-3117729)
chr6 (427-528)||(10541967-10542069)
chr6 (446-555)||(14663231-14663341)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 212 - 559
Target Start/End: Complemental strand, 18313799 - 18313456
Alignment:
Q  212 atttacatcatattttttaagaaaatattgcactaatataacacaagttttattgaagaatattttaaagaatctaattattattattatttttctcata 311  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||  ||||||||||||||||||||||||||||||||||||||||    ||||||||    
T  18313799 atttacatcatattttttaagaaaatattgcattatcataacacaaactttattgaagaatattttaaagaatctaattattattatt----ttctcata 18313704  T
Q  312 acaagactgtgaacctctcgaaaacgaaaactgaaataaactttaagttggttttttggg-ctttgtgttgtactctttcggtagattgaaggtcgcgag 410  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||| ||||||||||||||||    
T  18313703 acaagactgtgaacctctcaaaaacgaaaactgaaataaactt-aagttggtttttttggactttgtgttgtactctttcggtggattgaaggtcgcgag 18313605  T
Q  411 gtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttttctttagggtgttcttcatg 510  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  18313604 gtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagtttgggttttaggattttggagtttttctttagggtgttcttcatg 18313505  T
Q  511 ggtgagtagtgacgatggatgatgatggatatcgtgtttatagtgtttg 559  Q
    |||||||||||||||||  || ||||||||||||||||||  |||||||    
T  18313504 ggtgagtagtgacgatgagtggtgatggatatcgtgtttacggtgtttg 18313456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 364 - 550
Target Start/End: Original strand, 34378170 - 34378357
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    |||||||||||||| |||| |||||||||| ||  | ||||||||||||||||||||| ||  ||||| |||| |||| ||||||||| ||||||||| |    
T  34378170 tttttgggctttgttttgtgctctttcggtggaccggaggtcgcgaggtttgtgatagttgtttgatccttcggttagatgctcttcgtaatgtggctca 34378269  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 550  Q
    ||||||||||| || |||  ||||||| | || |||||||||||  ||||||||||||||||||||| | || |||||| ||||||||    
T  34378270 gcttgggtgttggggtttgagagttttattttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgttta 34378357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 364 - 555
Target Start/End: Original strand, 18593315 - 18593507
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||| ||||||| |||||||||| | | | |||||||||| |||||||||| ||||||||| |||| ||||||| |||||||||||||||| |    
T  18593315 tttttgggcttagtgttgtgctctttcggtggttcggaggtcgcgagatttgtgataggtgcatgatccttcggttaggtgttcttcgaaatgtggctca 18593414  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 555  Q
     |||||||||| || | | |||||||| | |  ||| |||||||  ||||||||||||||||||||  | || |||||| |||||||| ||||    
T  18593415 acttgggtgttggggtctgggagttttatttggaggatgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtg 18593507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 364 - 526
Target Start/End: Original strand, 698433 - 698596
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||||||||||| || | |   |||| |||||||||||||||||||||| ||| |||| |||||||||||| ||||||||||| |    
T  698433 tttttgggctttgtgttgtactctttctgtggttcagaggttgcgaggtttgtgatagctgcataatccttcggttaggtgctctttgaaatgtggctca 698532  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgat 526  Q
    ||||||||||| || | |  ||||||| | |  |||||||||||  ||||||||||||||||||    
T  698533 gcttgggtgttggggtctgagagttttatttggagggtgttctttgtgggtgagtagtgacgat 698596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 93 - 175
Target Start/End: Complemental strand, 18313877 - 18313795
Alignment:
Q  93 ttggatttaccacttttctaacatcatatttctatattcgtttatttaaccaatgcattaaacacactataacattttgttta 175  Q
    |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  18313877 ttggatataccacttttctaacataatatttctatatttgtttatttaaccaatgcattaaacacactataacattttattta 18313795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 18313976 - 18313912
Alignment:
Q  17 catgatgattagctaatctatctacacaacagtttttatataaatttaagttgaacaataatttt 81  Q
    |||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  18313976 catgatgattagataatatatctacacaacaatttttatataaatttaagttgaacaataatttt 18313912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 420 - 555
Target Start/End: Complemental strand, 7161969 - 7161833
Alignment:
Q  420 agctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagta 518  Q
    |||||||||||| || | | ||||| ||||||| |||||||| |||||| ||||| || | | |||||||| | || | |||||||||   |||||||||    
T  7161969 agctgcatgatcctttggtcaggtgttcttcgatatgtggctcagcttgtgtgttggggtctgggagttttattttgatggtgttctttgggggtgagta 7161870  T
Q  519 gtgacgatggatgatgatggatatcgtgtttatagtg 555  Q
    |||||| ||| || || |||| |||||||||| ||||    
T  7161869 gtgacgttgggtggtggtggaaatcgtgtttacagtg 7161833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 4e-49; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 364 - 527
Target Start/End: Original strand, 31482956 - 31483119
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |    
T  31482956 tttttgggctttgtgttgtgctctttcggtggattggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtggctca 31483055  T
Q  464 gcttgggtgttaggattttggagtttttctttagggtgttcttcatgggtgagtagtgacgatg 527  Q
    |||| |||||| || |||  |||||||| || |||||||||||  ||||| |||||||||||||    
T  31483056 gcttaggtgttggggtttgagagttttttttaagggtgttctttgtgggttagtagtgacgatg 31483119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 364 - 550
Target Start/End: Complemental strand, 34475763 - 34475578
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| || |    
T  34475763 tttttgggctttgtgttgtgctctttcggtggattggaggtcgcgaggtttgtgatagctgtatgatccttcggttaggtgctcttcgaaatgtgactca 34475664  T
Q  464 gcttgggtgttaggattttggagtttttctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 550  Q
    |||| |||||| || | |  |||||||| || |||||||||||  ||||||||||||||||||||  | || |||||| ||||||||    
T  34475663 gcttaggtgttggggtatgagagttttt-ttaagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgttta 34475578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 354 - 555
Target Start/End: Original strand, 47235761 - 47235962
Alignment:
Q  354 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 453  Q
    ||||||||||||| ||||||||||||| | |||||||||| |||   ||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  47235761 ttaagttggtttt-tgggctttgtgttttgctctttcggtggatcagaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaa 47235859  T
Q  454 atgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttata 552  Q
    |||||| | |||||||||||| || | |  ||||||| | || |||||||||||  ||||||||||||||||||||| | || |||||| |||||||| |    
T  47235860 atgtggttcagcttgggtgttggggtctgcgagttttattttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttaca 47235959  T
Q  553 gtg 555  Q
    |||    
T  47235960 gtg 47235962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 354 - 550
Target Start/End: Original strand, 45163918 - 45164114
Alignment:
Q  354 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 453  Q
    ||||||||||||| ||||||||||||||| |||||||||| ||| | ||||| ||| ||||||||||||||||||||| |||| ||||||||||||||||    
T  45163918 ttaagttggtttt-tgggctttgtgttgtgctctttcggtggatcggaggtcacgaagtttgtgatagctgcatgatccttcggttaggtgctcttcgaa 45164016  T
Q  454 atgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 550  Q
    ||||||||||||||||||||| || | | |||||||| | || |||||||| ||  | ||||| ||||||||||||  | ||||| ||| ||||||||    
T  45164017 atgtggcttagcttgggtgttggggtctaggagttttattttgagggtgttatttgtaggtgattagtgacgatgggcggtgatgaataccgtgttta 45164114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 354 - 555
Target Start/End: Original strand, 20611846 - 20612046
Alignment:
Q  354 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 453  Q
    ||||||||||||| ||||||||| ||||| |||||||||| ||| | |||||||||||||||||||||||| |||||| |||| ||||||||||||||||    
T  20611846 ttaagttggtttt-tgggctttgcgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaa 20611944  T
Q  454 atgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttata 552  Q
    ||||| || |||||||||||| || | | |||||||| |  | |||||||||||  ||||||||||||||||||||  |||| ||||||  ||||||| |    
T  20611945 atgtgactcagcttgggtgtt-gggtctaggagttttattctgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttaca 20612043  T
Q  553 gtg 555  Q
    |||    
T  20612044 gtg 20612046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 354 - 555
Target Start/End: Complemental strand, 2392524 - 2392323
Alignment:
Q  354 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 453  Q
    |||||||||||||| |||||||||||||| |||||||||| ||| | ||||||||||||||||| ||||||||||||| |||| |||||  |||||| ||    
T  2392524 ttaagttggttttt-gggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaa 2392426  T
Q  454 atgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttata 552  Q
    |||||||| |||||||||||| || | | |||||||| | ||   |||||| ||  ||||||||||||||||||||  | || |||||| |||||||| |    
T  2392425 atgtggctcagcttgggtgttggggtctaggagttttattttgtaggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttaca 2392326  T
Q  553 gtg 555  Q
    |||    
T  2392325 gtg 2392323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 373 - 528
Target Start/End: Original strand, 53247981 - 53248138
Alignment:
Q  373 tttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtg 472  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||| || |||||||    
T  53247981 tttgtgttgtgctctttcggtggattggaggtcgcgaggtttgtgatagttgtatgatccttcggttatgtgctcttcgaaatgtggctcagtttgggtg 53248080  T
Q  473 ttaggattttggagtttttcttt--agggtgttcttcatgggtgagtagtgacgatgg 528  Q
    || || | |  |||||||| |||  || ||||||||  ||||||||||||||||||||    
T  53248081 ttggggtctgagagtttttattttgagagtgttctttgtgggtgagtagtgacgatgg 53248138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 364 - 528
Target Start/End: Original strand, 17551029 - 17551189
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| |||||||| |  || | ||||||||||||||||||||||||||||||     | |||||||||||||||||||||||| |    
T  17551029 tttttgggctttgtgttgtgctctttcgatgcatcggaggtcgcgaggtttgtgatagctgcatgat-----ggttaggtgctcttcgaaatgtggctca 17551123  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 528  Q
    | ||||||||| || | |  ||||||| | || |||||||||||  | ||||||||||||||||||    
T  17551124 gtttgggtgttggggtctgagagttttattttgagggtgttctttgtcggtgagtagtgacgatgg 17551189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 401 - 555
Target Start/End: Complemental strand, 2394242 - 2394087
Alignment:
Q  401 aggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttt-tctttaggg 499  Q
    ||||||||||||||||| ||||||||||||| |||| |||||  |||||| |||||||||| |||||||||||| || | | |||||||| | ||   ||    
T  2394242 aggtcgcgaggtttgtgctagctgcatgatccttcggttaggatctcttcaaaatgtggctcagcttgggtgttggggtctaggagttttattttgtagg 2394143  T
Q  500 tgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 555  Q
    |||| ||  ||||||||||||||||||||  | || |||||| |||||||| ||||    
T  2394142 tgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtg 2394087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 356 - 550
Target Start/End: Original strand, 43012440 - 43012634
Alignment:
Q  356 aagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaat 455  Q
    ||||||||||||  |  ||||| |||| ||||||||||  ||   ||||||||||||| |||  || ||||||||| |||| | ||||||||||||||||    
T  43012440 aagttggtttttgagcttttgttttgtgctctttcggtgaatcagaggtcgcgaggtt-gtggaagttgcatgatcgttcggtcaggtgctcttcgaaat 43012538  T
Q  456 gtggcttagcttgggtgttaggattttggagtttttcttt-agggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 550  Q
    |||||| |||||||||||| || | | ||||||||  ||| |||||||||||    ||||||||||| ||||||| |  | |||||| ||||||||    
T  43012539 gtggctcagcttgggtgttggggtctaggagttttaatttgagggtgttctttggaggtgagtagtggcgatggacgggggtggataccgtgttta 43012634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 356 - 550
Target Start/End: Original strand, 19176567 - 19176763
Alignment:
Q  356 aagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcatt--cgtttaggtgctcttcgaa 453  Q
    |||||||||||| ||  ||||  |||| |||||| ||| ||| | ||||||| ||||| |||  |||||||||||| ||  || | |||||||||||| |    
T  19176567 aagttggtttttgggcttttgatttgtgctcttttggtggatcggaggtcgcaaggtt-gtggaagctgcatgatccttttcggtcaggtgctcttcgta 19176665  T
Q  454 atgtggcttagcttgggtgttaggattttggagtttttcttt-agggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 550  Q
    |||||||| |||||||||||  || | | || |||||  ||| ||||||||||| | |||||||||||||||||||||| || ||||||  |||||||    
T  19176666 atgtggctcagcttgggtgtcggggtctgggtgttttattttgagggtgttctttaggggtgagtagtgacgatggatggtggtggatactgtgttta 19176763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 550
Target Start/End: Complemental strand, 30352359 - 30352263
Alignment:
Q  453 aatgtggcttagcttgggtgttaggattttggagtttttctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 550  Q
    ||||||||| |||||||||||| || | | ||||||||| ||||||||||||||  ||| |||||||||||||||| || || |||||| ||||||||    
T  30352359 aatgtggctcagcttgggtgttggggtctcggagttttt-tttagggtgttctttgtggatgagtagtgacgatgggtggtggtggataccgtgttta 30352263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 510 - 558
Target Start/End: Original strand, 45399015 - 45399063
Alignment:
Q  510 gggtgagtagtgacgatggatgatgatggatatcgtgtttatagtgttt 558  Q
    ||||||||||||||||||||||||  ||||||| ||||||| |||||||    
T  45399015 gggtgagtagtgacgatggatgattgtggatattgtgtttacagtgttt 45399063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 474
Target Start/End: Complemental strand, 40023590 - 40023472
Alignment:
Q  354 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 453  Q
    |||||||||||||| ||  ||||| |||| |||||||||| |||   ||| || |||| |||||  ||||||||| ||||||| ||||| ||| |||| |    
T  40023590 ttaagttggtttttgggcttttgttttgtgctctttcggtggatcagaggacgggagg-ttgtggaagctgcatgttcattcggttaggagcttttcg-a 40023493  T
Q  454 atgtggcttagcttgggtgtt 474  Q
    |||||||| |||| |||||||    
T  40023492 atgtggctcagctagggtgtt 40023472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 364 - 555
Target Start/End: Complemental strand, 47325894 - 47325702
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||| ||| |||||||| | ||| | |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||| |    
T  47325894 tttttgggctttgtgctgtgctctttcgatggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaaatgtggctca 47325795  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 555  Q
    ||||||||||| || | | |||||||| | || |||||||||||  ||||||||||||||||||||  |||||||||||  ||||||| ||||    
T  47325794 gcttgggtgttggggtctgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatgatggatactgtgtttacagtg 47325702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 364 - 555
Target Start/End: Complemental strand, 44353573 - 44353380
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |       
T  44353573 tttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccg 44353474  T
Q  464 gcttgggtgttaggattttggagttt--ttctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 555  Q
    ||||||||||| || | | |||||||  || || |||||||||||  | ||||||||||||||||||| | || |||||| |||||||| ||||    
T  44353473 gcttgggtgttggggtctgggagttttatttttgagggtgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtg 44353380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 364 - 528
Target Start/End: Complemental strand, 5860297 - 5860132
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||| |    
T  5860297 tttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcagttaggtgctcttcgaaatgtggctca 5860198  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 528  Q
    ||||||||||| || | | |||||||| | || |||||||||||  ||| ||||||||||||||||    
T  5860197 gcttgggtgttggggtctgggagttttattttcagggtgttctttgtggatgagtagtgacgatgg 5860132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 364 - 547
Target Start/End: Original strand, 38306333 - 38306517
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| |||||||| | | | | ||||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||| |    
T  38306333 tttttgggctttgtgttgtgctctttcgatggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaagtgctcttcgatatgtggctca 38306432  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgt 547  Q
    ||||||||||| || | |  ||||||| | || |||||||||||  | |||||||||||||||||| || || ||||||||||||    
T  38306433 gcttgggtgttggggtctgtgagttttattttgagggtgttctttgtaggtgagtagtgacgatgggtggtggtggatatcgtgt 38306517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 364 - 555
Target Start/End: Original strand, 37795061 - 37795253
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |    
T  37795061 tttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaactgtggctca 37795160  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 555  Q
    ||||||||||| || |||  ||||||| | || |||||||||||  ||| | |||||| | |||||  | || |||||| |||||||| ||||    
T  37795161 gcttgggtgttggggtttgagagttttattttgagggtgttctttgtggttaagtagtaatgatgggcggtggtggataccgtgtttacagtg 37795253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 364 - 550
Target Start/End: Complemental strand, 3419665 - 3419477
Alignment:
Q  364 tttttgggctttgtgt-tgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctt 462  Q
    |||||||||||||| | ||| |||||||||| |||   ||||| | ||||||||||||||||| ||||| |||| |||||||| ||||||| ||||||||    
T  3419665 tttttgggctttgtttctgtgctctttcggtggatcagaggtcacaaggtttgtgatagctgcttgatccttcggttaggtgcgcttcgaattgtggctt 3419566  T
Q  463 agcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 550  Q
    | |||||||||| || ||| |||||||| | || |||||||||||  || |||||||||||||||| | | || |||||||| ||||||    
T  3419565 aacttgggtgttggggtttgggagttttattttaagggtgttctttgtgagtgagtagtgacgatgaacggtggtggatatcatgttta 3419477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 364 - 550
Target Start/End: Original strand, 10244254 - 10244441
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||| ||||||||||| ||||||| || | | | ||||||||||||||||||||| ||||||||| |||| |||||||||||| ||| ||||||| |    
T  10244254 tttttggcctttgtgttgtgctctttcagtggttcggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggtgctctttgaattgtggctca 10244353  T
Q  464 gcttgggtgttaggattttggagtttttctt-tagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 550  Q
    ||||||||||| || | | ||| ||||  ||  |||||| ||||  ||||||||||||||||||||  |||| |||||| | ||||||    
T  10244354 gcttgggtgtttgggtctgggatttttagttggagggtggtctttgtgggtgagtagtgacgatgggcgatggtggataccatgttta 10244441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 354 - 528
Target Start/End: Original strand, 25160878 - 25161048
Alignment:
Q  354 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 453  Q
    |||||||||||||| |||||  ||||||| |||||||||| ||||| ||||| | ||||||||||||||||  ||||| |||  |||||||||||| |||    
T  25160878 ttaagttggttttt-gggct--gtgttgtgctctttcggtggattggaggtctcaaggtttgtgatagctgtgtgatccttcagttaggtgctcttggaa 25160974  T
Q  454 atgtggcttagcttgggtgttaggattttggagtttttctttagggtgttcttcatgggtgagtagtgacgatgg 528  Q
    |||||||| | ||| | |||| || | |  |||||||| || | |||||||||  ||||||||||||||||||||    
T  25160975 atgtggctcaacttagatgttggggtctgagagttttt-ttaaaggtgttctttgtgggtgagtagtgacgatgg 25161048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 423 - 528
Target Start/End: Complemental strand, 31972084 - 31971978
Alignment:
Q  423 tgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtg 521  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||||||| || | | |||||||| | |  |||||||||||  |||||||||||||    
T  31972084 tgcatgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctgggagttttatttggagggtgttctttgtgggtgagtagtg 31971985  T
Q  522 acgatgg 528  Q
    |||||||    
T  31971984 acgatgg 31971978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 422 - 550
Target Start/End: Original strand, 3867246 - 3867375
Alignment:
Q  422 ctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttttcttt--agggtgttcttcatgggtgagtag 519  Q
    |||||||||| || | | ||||||||||||| |||||||| |||||||||||| ||| | ||||  |||| |||  |||||||||||   ||||||||||    
T  3867246 ctgcatgatcctttggtcaggtgctcttcgatatgtggctcagcttgggtgtt-ggagtatggaagttttattttgagggtgttctttgggggtgagtag 3867344  T
Q  520 tgacgatggatgatgatggatatcgtgttta 550  Q
    |||||||||| | || |||||||||||||||    
T  3867345 tgacgatggacggtggtggatatcgtgttta 3867375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 373 - 474
Target Start/End: Original strand, 33435191 - 33435291
Alignment:
Q  373 tttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtg 472  Q
    ||||| |||| |||||||||| ||| | ||||||||||||| |||| |||| ||||||| |||| | |||||||||||||| ||||||| ||||||| ||    
T  33435191 tttgttttgtgctctttcggtggatcggaggtcgcgaggtt-gtgaaagctacatgatccttcggtcaggtgctcttcgaattgtggctcagcttggttg 33435289  T
Q  473 tt 474  Q
    ||    
T  33435290 tt 33435291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 474
Target Start/End: Original strand, 34390025 - 34390143
Alignment:
Q  354 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 453  Q
    |||||||||||||| ||  ||| | |||| |||||||||| ||| | |||||| |||| |||||  ||||||||| ||||||| ||||| ||| ||| ||    
T  34390025 ttaagttggtttttgggcttttattttgtgctctttcggtggatcggaggtcgagagg-ttgtggaagctgcatgttcattcgattaggagcttttc-aa 34390122  T
Q  454 atgtggcttagcttgggtgtt 474  Q
    |||||||| | ||||||||||    
T  34390123 atgtggctcaacttgggtgtt 34390143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 506
Target Start/End: Complemental strand, 41089764 - 41089614
Alignment:
Q  356 aagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaat 455  Q
    ||||||||||||  |  ||||| ||||  ||||||||| ||| | ||||||||||||| |||  |||||||||||  |||||| |||||||||||||| |    
T  41089764 aagttggtttttgagcttttgttttgtgatctttcggtggatcggaggtcgcgaggtt-gtggaagctgcatgattcttcgttgaggtgctcttcgaagt 41089666  T
Q  456 gtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttctt 506  Q
    || ||| |   ||||||||||| | | |||||||| | || |||||||||||    
T  41089665 gtagctcaagatgggtgttagggtctgggagttttattttgagggtgttctt 41089614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 5e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 364 - 550
Target Start/End: Original strand, 10524173 - 10524359
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| |    
T  10524173 tttttgggctttgtgttgtgctctttcggt-gttcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgatatgtggctca 10524271  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 550  Q
    ||||||||||| || ||| |||||||| | |  |||||||||||  ||||||||||||||||||||  | || |||||| ||||||||    
T  10524272 gcttgggtgttggggtttgggagttttatttggagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgttta 10524359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 364 - 541
Target Start/End: Complemental strand, 39338874 - 39338696
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||||| |||||| |||| |||||||||||||||| |||| || |    
T  39338874 tttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgaatgatccttcggttaggtgctcttcgaattgtgactca 39338775  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggata 541  Q
    |||||||||||  | | | |||||||| | || |||||||||||  ||||||||||||||||||||  |||| ||||||    
T  39338774 gcttgggtgttgaggtctgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggata 39338696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 364 - 555
Target Start/End: Complemental strand, 17116889 - 17116696
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||| |||||||| |||| || ||||| ||||||| |||||||||||||||||||| || | |||||  ||| |||||||||||||| ||||||||| |    
T  17116889 tttttaggctttgttttgtgctttttcgatagattggaggtcgcgaggtttgtgatatctacttgatccatcggttaggtgctcttcgtaatgtggctca 17116790  T
Q  464 gcttgggtgttaggattttggagtttttcttt--agggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 555  Q
    ||||||||||| || | |  |||||||| |||  |||||||||||  |||||||||| |||||||||  | || |||||| |||||||| ||||    
T  17116789 gcttgggtgttggggtctgagagtttttattttgagggtgttctttgtgggtgagtaatgacgatgggcggtggtggataccgtgtttacagtg 17116696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 528
Target Start/End: Original strand, 387262 - 387411
Alignment:
Q  379 ttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttagga 478  Q
    |||| |||||| ||| ||| | ||||| ||||||||  || ||||||||| ||||||  | ||||||||||||| | |||||| |||||||||||| ||     
T  387262 ttgtgctcttttggtggatcggaggtcacgaggttttgga-agctgcatgttcattcagtcaggtgctcttcgataggtggctcagcttgggtgttgggg 387360  T
Q  479 ttttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 528  Q
    | | |||||||| | || |||||||||||   |||||| ||||||||||||    
T  387361 tctgggagttttattttgagggtgttctttgggggtgaatagtgacgatgg 387411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 364 - 555
Target Start/End: Original strand, 20138498 - 20138691
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |       
T  20138498 tttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatgtgacccg 20138597  T
Q  464 gcttgggtgttaggattttggagttt--ttctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 555  Q
    ||||||||||| || | | |||||||  || || |||||||||||  | ||||||||||||||||||| | || |||||| |||||||| ||||    
T  20138598 gcttgggtgttggggtctgggagttttatttttgagggtgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtg 20138691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 364 - 555
Target Start/End: Original strand, 9519571 - 9519764
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| |||||||||| | | | |||| |||| |||||||||||||||||||||||||| |||||||||||||||||| ||||| |    
T  9519571 tttttgggctttgtgttgtgctctttcggtgggtcggaggttgcgaagtttgtgatagctgcatgatcattcggttaggtgctcttcgaaatatggctca 9519670  T
Q  464 gcttgggtgttaggattttg-gagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 555  Q
    ||||||||||| ||  | || ||||||| | || |||||||||||  ||||||||||||||||||||  | || |||||| |||||||| ||||    
T  9519671 gcttgggtgttgggggtctgagagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtg 9519764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 365 - 555
Target Start/End: Complemental strand, 31207370 - 31207179
Alignment:
Q  365 ttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttag 464  Q
    ||||||| |||||||||| || ||||||| ||| | |||||||||||||||||||||||| |||| | |||| |||||||||||||||||||||||| ||    
T  31207370 ttttgggatttgtgttgtgctttttcggtggatcggaggtcgcgaggtttgtgatagctgaatgacccttcggttaggtgctcttcgaaatgtggctcag 31207271  T
Q  465 cttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 555  Q
    |||||||||| |  | | |||||||| | || |||||||||||  ||||||||||||||||||||  |||| ||||||  ||||||| ||||    
T  31207270 cttgggtgttggagtatgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttacagtg 31207179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 364 - 527
Target Start/End: Complemental strand, 12898283 - 12898120
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    |||| |||||||||||||| |||||||| | | | | ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| |    
T  12898283 ttttggggctttgtgttgtgctctttcgatggttcggaggtcgcgaggtttgtgatagctgc-tgatccttcggttaggtgctcttcgaaatgtggctca 12898185  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatg 527  Q
    ||||||||||| || | || ||||||| | || |||||||||||  |||||||||||||||||||    
T  12898184 gcttgggtgttggggtcttagagttttattttgagggtgttctttgtgggtgagtagtgacgatg 12898120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 364 - 550
Target Start/End: Complemental strand, 37986867 - 37986680
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    |||||| |||||||||||| |||||||||| | | | ||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||| |    
T  37986867 tttttgtgctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcctgatccttcggttaggtgctcttcgaaatgtggctca 37986768  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 550  Q
    |||||||||||  | | | |||||||| | |  |||||||||||  |||||||||| ||||||||| || || | |||| ||||||||    
T  37986767 gcttgggtgtttcggtctgggagttttatttggagggtgttctttgtgggtgagtaatgacgatgggtggtggtagataccgtgttta 37986680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 364 - 550
Target Start/End: Complemental strand, 24995404 - 24995216
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| ||||||| || | |   ||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |    
T  24995404 tttttgggctttgtgttgtgctctttcagtgggtcagaggtcgcgaggtttgtgatagctgcatgatccttcggttaggtgctcttcgaaatatggctca 24995305  T
Q  464 gcttgggtgtt-aggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 550  Q
    |||||||||||  || | | |||||||| | || |||||||||||  || |||||||||||||||||  | || |||||| ||||||||    
T  24995304 gcttgggtgttgggggtctaggagttttattttgagggtgttctttgtgcgtgagtagtgacgatgggcggtggtggataccgtgttta 24995216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 364 - 528
Target Start/End: Complemental strand, 32066304 - 32066139
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| |||||||||| | |   |||| ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| | |    
T  32066304 tttttgggctttgtgttgtgctctttcggtggttcagaggttgcgaggtttgtgatagctgcatgatcattcggttagatgctctttgaaatgtggttca 32066205  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 528  Q
    ||||||||||| || | |  ||||||| | |  |||||||||||  || |||||||||||||||||    
T  32066204 gcttgggtgttggggtctgagagttttatttggagggtgttctttgtgagtgagtagtgacgatgg 32066139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 364 - 550
Target Start/End: Complemental strand, 41893410 - 41893224
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| |||||| ||| | |   ||||||| ||||||||||||||||||||||| ||| | ||||| ||||||||||||||||| |    
T  41893410 tttttgggctttgtgttgtgctcttttggtggttaagaggtcgcaaggtttgtgatagctgcatgatccttc-tataggtactcttcgaaatgtggctca 41893312  T
Q  464 gcttgggtgttaggattttggagtt-tttctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 550  Q
    |||||||||||  | | | |||||| | | || |||||||||||  ||||||||||||||||||||  | || |||||| ||||||||    
T  41893311 gcttgggtgttgaggtctgggagttctattttcagggtgttctttgtgggtgagtagtgacgatggtcggtggtggataccgtgttta 41893224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 364 - 470
Target Start/End: Complemental strand, 16457470 - 16457364
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||| ||||||||||||| |||||||||| | | | | |||| |||||||||||||||||||||||| |  | |||||||||||| ||||||||||| |    
T  16457470 tttttaggctttgtgttgtgctctttcggtggttcggatgtcgtgaggtttgtgatagctgcatgatcttgtggttaggtgctctttgaaatgtggctca 16457371  T
Q  464 gcttggg 470  Q
    |||||||    
T  16457370 gcttggg 16457364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 364 - 526
Target Start/End: Complemental strand, 34389014 - 34388852
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| || ||||||| ||| | |||||| ||||||||||||||||   ||||| |||  ||||||| |||||   |||||||| |    
T  34389014 tttttgggctttgtgttgtgctatttcggtggatcgtaggtcgtgaggtttgtgatagct-agtgatccttcagttaggtgttcttcatcatgtggctca 34388916  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgat 526  Q
    ||||||||||| || | |  ||||||| | || |||||||||||  ||||||||||||||||||    
T  34388915 gcttgggtgttggggtatgagagttttattttgagggtgttctttgtgggtgagtagtgacgat 34388852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 395 - 474
Target Start/End: Original strand, 22773602 - 22773681
Alignment:
Q  395 gattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgtt 474  Q
    ||||| ||||| |||||||||||||| || ||||||| |||  |||||||||||||||||||||||| || |||||||||    
T  22773602 gattggaggtcacgaggtttgtgatatctacatgatccttctgttaggtgctcttcgaaatgtggctcagtttgggtgtt 22773681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 364 - 461
Target Start/End: Original strand, 36630909 - 36631006
Alignment:
Q  364 tttttgggcttt-gtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggct 461  Q
    |||||||||||| || |||| |||||||| | ||| | ||||||||||||| |||  |||||||||||| |||| | ||||||||||||||||||||||    
T  36630909 tttttgggcttttgttttgtgctctttcgatggatcggaggtcgcgaggtt-gtgggagctgcatgatccttcggtcaggtgctcttcgaaatgtggct 36631006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 496 - 555
Target Start/End: Complemental strand, 16457351 - 16457292
Alignment:
Q  496 agggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 555  Q
    |||||| |||| |||||||||||||||||||||| | || |||||| |||||||| ||||    
T  16457351 agggtggtctttatgggtgagtagtgacgatggacggtggtggataccgtgtttacagtg 16457292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 5e-39; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 354 - 555
Target Start/End: Complemental strand, 24449948 - 24449747
Alignment:
Q  354 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 453  Q
    |||||||||||||| ||| |||||||||| |||||| ||| ||| | ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||    
T  24449948 ttaagttggttttt-gggatttgtgttgtgctcttttggtggatcggaggtcgcgaggtttgtgatagttgcatgatccttcggttaggtgctcttcgaa 24449850  T
Q  454 atgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttata 552  Q
    ||| |||| |||||||||||| || | | |||||||| | || |||||||| ||  ||||||||||||||||||||  | || |||||| |||||||| |    
T  24449849 atgcggctcagcttgggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttaca 24449750  T
Q  553 gtg 555  Q
    |||    
T  24449749 gtg 24449747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 364 - 555
Target Start/End: Complemental strand, 46692828 - 46692636
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||||||| ||| | || ||| |||||||||||||||||||| |    
T  46692828 tttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcattatcctccggttaagtgctcttcgaaatgtggctca 46692729  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 555  Q
    ||||||||||| || | | | |||||| | |  |||||||||||  ||||||||||||||||||||  | || | ||||||||||||| ||||    
T  46692728 gcttgggtgttggggtctggaagttttatttggagggtgttctttgtgggtgagtagtgacgatgggcggtggttgatatcgtgtttacagtg 46692636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 364 - 555
Target Start/End: Original strand, 5459233 - 5459425
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| ||||||| || | | | |||| |||||||||||||||||||||||||| |||  |||||||||||| ||||||||||| |    
T  5459233 tttttgggctttgtgttgtgctctttcagtggttcggaggttgcgaggtttgtgatagctgcatgatccttcagttaggtgctctttgaaatgtggctca 5459332  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 555  Q
    ||||||||||| || | | | |||||| | || | |||||||||  ||||||||||||||||||||  | || |||||| |||||||| ||||    
T  5459333 gcttgggtgttggggtctggaagttttattttgatggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtg 5459425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 31585769 - 31585608
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| || ||||||| | | | |||||||||||||||||||||||| |||||| || | |||||||||||||||||||||||| |    
T  31585769 tttttgggctttgtgttgtgctatttcggtgggtcggaggtcgcgaggtttgtgatagctgtatgatcctttggttaggtgctcttcgaaatgtggctaa 31585670  T
Q  464 gcttgggtgttaggattttg-gagtttt-tctttagggtgttcttcatgggtgagtagtgac 523  Q
    ||||||||||| ||  | || ||||||| | || |||||||||||  |||||||||||||||    
T  31585669 gcttgggtgttgggggtctgagagttttattttgagggtgttctttgtgggtgagtagtgac 31585608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 364 - 550
Target Start/End: Complemental strand, 5389430 - 5389244
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| |||||||||| | | | ||||||||||||||||| ||||| |||| || |||| ||| ||||||||||| |||||||| |    
T  5389430 tttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgttagctacatggtccttcggttaagtgctcttcgatatgtggctca 5389331  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcgtgttta 550  Q
    ||||||||||| || | | |||||||| | || |||||||||||  |  |||||||||||||||||  | || |||||| ||||||||    
T  5389330 gcttgggtgttggggtctgggagttttattttgagggtgttctt-gtaagtgagtagtgacgatgggcggtggtggataccgtgttta 5389244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 365 - 526
Target Start/End: Original strand, 41920525 - 41920692
Alignment:
Q  365 ttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgat-----cattcgtttaggtgctcttcgaaatgtgg 459  Q
    |||||||||||||||||| |||||||||| ||| | ||||||||||||||||||||||||||||||     | |||  |||||||||||||   ||||||    
T  41920525 ttttgggctttgtgttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcatgatcctaaccttcagttaggtgctcttcatcatgtgg 41920624  T
Q  460 cttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgat 526  Q
    || |||||||||||| || | |||||||||| | || |||||||| ||  ||||||||||||||||||    
T  41920625 ctcagcttgggtgttggggtcttggagttttattttgagggtgttttttgtgggtgagtagtgacgat 41920692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 365 - 479
Target Start/End: Complemental strand, 30685912 - 30685798
Alignment:
Q  365 ttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttag 464  Q
    |||||||||||||||||| |||||||||| | | | ||||||||||||||||||||||||||||||| || | |||||||||| | || |||||||| ||    
T  30685912 ttttgggctttgtgttgtgctctttcggtggttcggaggtcgcgaggtttgtgatagctgcatgatcctttggttaggtgctccttgatatgtggctcag 30685813  T
Q  465 cttgggtgttaggat 479  Q
    |||||||||| ||||    
T  30685812 cttgggtgttgggat 30685798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 399 - 529
Target Start/End: Complemental strand, 6764355 - 6764224
Alignment:
Q  399 gaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttt-tctttag 497  Q
    ||||| || ||||||||||||||||||||| || |||| |||||||||||||||||||||||| | ||||| |  | || | | |||||||| | || ||    
T  6764355 gaagggcgtgaggtttgtgatagctgcatggtccttcggttaggtgctcttcgaaatgtggctcaacttggatactggggtctgggagttttattttcag 6764256  T
Q  498 ggtgttcttcatgggtgagtagtgacgatgga 529  Q
    | |||||||  |||||||||||||||||||||    
T  6764255 gatgttctttgtgggtgagtagtgacgatgga 6764224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 357 - 461
Target Start/End: Complemental strand, 24684493 - 24684390
Alignment:
Q  357 agttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatg 456  Q
    ||||||||||| ||  ||||| |||| |||||||||| ||| | ||||||||||||| |||  || ||||||||| |||| | |||||||||||||||||    
T  24684493 agttggtttttgggcttttgttttgtgctctttcggtggatcggaggtcgcgaggtt-gtggaagatgcatgatccttcggtcaggtgctcttcgaaatg 24684395  T
Q  457 tggct 461  Q
    |||||    
T  24684394 tggct 24684390  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 555
Target Start/End: Original strand, 32882585 - 32882630
Alignment:
Q  510 gggtgagtagtgacgatggatgatgatggatatcgtgtttatagtg 555  Q
    ||||||||||||||||||| || || ||||||||||||||| ||||    
T  32882585 gggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtg 32882630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 5e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 364 - 528
Target Start/End: Original strand, 8255099 - 8255264
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    |||||||||||||| |||| |||||||||| ||| | ||||||||||||||||||||||||| |||||  ||  |||||||||||||| ||||||||| |    
T  8255099 tttttgggctttgttttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctca 8255198  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 528  Q
    |||||||||||||| | |  ||||||| | || |||||||||||  ||||||||||||||||||||    
T  8255199 gcttgggtgttagggtctgtgagttttattttgagggtgttctttgtgggtgagtagtgacgatgg 8255264  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 364 - 528
Target Start/End: Original strand, 8268517 - 8268682
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    |||||||||||||| |||| |||||||||| ||| | ||||||||||||||||||||||||| |||||  ||  |||||||||||||| ||||||||| |    
T  8268517 tttttgggctttgttttgtgctctttcggtggatcggaggtcgcgaggtttgtgatagctgcttgatccatcagttaggtgctcttcgtaatgtggctca 8268616  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 528  Q
    |||||||||||||| | |  ||||||| | || |||||||||||  ||||||||||||||||||||    
T  8268617 gcttgggtgttagggtctgtgagttttattttgagggtgttctttgtgggtgagtagtgacgatgg 8268682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 364 - 460
Target Start/End: Original strand, 30964513 - 30964609
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggc 460  Q
    |||||||| |||||||||| |||||| ||| | | | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30964513 tttttgggttttgtgttgtgctcttttggtggttcggaggtcgcgaggtttgtgatagctgcatgatcattcggttaggtgctcttcgaaatgtggc 30964609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 364 - 524
Target Start/End: Complemental strand, 30167573 - 30167412
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    |||||||| |||||||||| |||||||||| |   | |||||||||||||| |||||||||||||| | |||| ||| | |||||||||||||||||  |    
T  30167573 tttttggggtttgtgttgtgctctttcggtggtccggaggtcgcgaggtttatgatagctgcatgacccttcggttaagcgctcttcgaaatgtggccca 30167474  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacg 524  Q
     |||||||||| || | | |||||||| | || |||||||||||  ||||||||| ||||||    
T  30167473 acttgggtgttggggtatgggagttttattttgagggtgttctttgtgggtgagtggtgacg 30167412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 518
Target Start/End: Original strand, 4305797 - 4305951
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||| ||||||||||||| |||||| ||| |     ||||||| |||||||||||| |||||||||| |||| | |||||||||||| ||||||||| |    
T  4305797 tttttaggctttgtgttgtgctcttttggtggtccagaggtcgcaaggtttgtgataactgcatgatccttcggtgaggtgctcttcg-aatgtggctca 4305895  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagta 518  Q
     ||||||| || || ||| |||||||| | || |||||| ||||  ||||||||||    
T  4305896 acttgggtatttgggtttgggagttttattttcagggtgatctttgtgggtgagta 4305951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 510 - 559
Target Start/End: Complemental strand, 31050523 - 31050474
Alignment:
Q  510 gggtgagtagtgacgatggatgatgatggatatcgtgtttatagtgtttg 559  Q
    ||||||||||||||||||||||||| ||||| | ||||||| ||||||||    
T  31050523 gggtgagtagtgacgatggatgatggtggatgttgtgtttacagtgtttg 31050474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 364 - 528
Target Start/End: Original strand, 5777 - 5943
Alignment:
Q  364 tttttgggctttgtgtt-gtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctt 462  Q
    |||||||||||||| || || |||||||||||||| | ||||||| ||||||||||||||| | ||||| |||| |||||||||||||| |||||||||     
T  5777 tttttgggctttgtttttgtgctctttcggtagatcggaggtcgcaaggtttgtgatagctacttgatccttcggttaggtgctcttcgtaatgtggctc 5876  T
Q  463 agcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgg 528  Q
    |||||||||||| |||| | |||||||| | || |||||||| ||  |||||||||||||| |||||    
T  5877 agcttgggtgttgggatctgggagttttattttgagggtgttttttgtgggtgagtagtgatgatgg 5943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 354 - 506
Target Start/End: Complemental strand, 35790 - 35640
Alignment:
Q  354 ttaagttggttttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaa 453  Q
    |||||||||||||| ||||||| |||||| |||||||||| ||| | ||||| |||| ||||||||||||||||||||  ||| ||||||||||||||||    
T  35790 ttaagttggttttt-gggctttatgttgtgctctttcggtggatcggaggtcacgagatttgtgatagctgcatgatccatcggttaggtgctcttcgaa 35692  T
Q  454 atgtggcttagcttgggtgttaggattttggagtttttctttagggtgttctt 506  Q
    ||| |||| |||||||||||| || | | ||||||||| ||||| ||||||||    
T  35691 atgaggctcagcttgggtgttggggtgtgggagttttt-tttagagtgttctt 35640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 364 - 527
Target Start/End: Original strand, 3117565 - 3117729
Alignment:
Q  364 tttttgggctttgtgttgtactctttcggtagattgaaggtcgcgaggtttgtgatagctgcatgatcattcgtttaggtgctcttcgaaatgtggctta 463  Q
    ||||||||||||||||||| ||||||  || | | | ||||||||||||||||||||| ||||||||| |||| ||| |||||||||||||||||||| |    
T  3117565 tttttgggctttgtgttgtgctctttatgtggttcggaggtcgcgaggtttgtgatagttgcatgatccttcgattatgtgctcttcgaaatgtggctca 3117664  T
Q  464 gcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatg 527  Q
     |||||||||| || | | |||||||| | | ||||||||||||  ||||| ||||| |||||||    
T  3117665 acttgggtgttggggtctgggagttttatttatagggtgttctttgtgggtaagtagagacgatg 3117729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 427 - 528
Target Start/End: Original strand, 10541967 - 10542069
Alignment:
Q  427 tgatcattcgtttaggtgctcttcgaaatgtggcttagcttgggtgttaggattttggagtttt-tctttagggtgttcttcatgggtgagtagtgacga 525  Q
    ||||| |||| |||||||||||||||||||||||| |||||||||||| || | | | |||||| | |  ||||| |||||  |||||||||||||||||    
T  10541967 tgatccttcggttaggtgctcttcgaaatgtggctcagcttgggtgttggggtctggaagttttatttggagggtattctttgtgggtgagtagtgacga 10542066  T
Q  526 tgg 528  Q
    |||    
T  10542067 tgg 10542069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 555
Target Start/End: Original strand, 14663231 - 14663341
Alignment:
Q  446 tcttcgaaatgtggcttagcttgggtgttaggattttggagtttttcttt-agggtgttcttcatgggtgagtagtgacgatggatgatgatggatatcg 544  Q
    ||||||||||||||||  |||||| |||| || ||| ||||||||  ||| ||| |||||||   |||||||||||||||||||  | || ||||||| |    
T  14663231 tcttcgaaatgtggctcggcttggatgttggggtttgggagttttattttgaggatgttctttgcgggtgagtagtgacgatgggcggtggtggatattg 14663330  T
Q  545 tgtttatagtg 555  Q
    |||||| ||||    
T  14663331 tgtttacagtg 14663341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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