View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18156_low_14 (Length: 579)

Name: NF18156_low_14
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18156_low_14
NF18156_low_14
[»] chr7 (16 HSPs)
chr7 (9-342)||(33693057-33693390)
chr7 (511-563)||(33693381-33693433)
chr7 (345-411)||(17272789-17272864)
chr7 (368-411)||(29681854-29681897)
chr7 (444-513)||(24532795-24532863)
chr7 (343-378)||(29681905-29681940)
chr7 (447-511)||(4290629-4290693)
chr7 (444-504)||(17272800-17272859)
chr7 (350-392)||(7211866-7211909)
chr7 (350-392)||(17272705-17272748)
chr7 (443-493)||(7169703-7169753)
chr7 (350-407)||(32315713-32315771)
chr7 (368-397)||(43500085-43500114)
chr7 (443-475)||(6980957-6980989)
chr7 (447-511)||(11016953-11017017)
chr7 (443-475)||(42494798-42494830)
[»] chr3 (23 HSPs)
chr3 (343-411)||(31342097-31342165)
chr3 (342-411)||(20286994-20287063)
chr3 (443-505)||(20286900-20286962)
chr3 (340-409)||(11512479-11512557)
chr3 (342-411)||(22893890-22893968)
chr3 (458-511)||(49159493-49159546)
chr3 (350-400)||(22894000-22894051)
chr3 (445-508)||(29081592-29081655)
chr3 (448-511)||(48342207-48342269)
chr3 (444-504)||(11512488-11512547)
chr3 (444-504)||(22893898-22893957)
chr3 (452-512)||(32385467-32385526)
chr3 (350-392)||(11512393-11512436)
chr3 (444-475)||(26960939-26960970)
chr3 (344-406)||(32385358-32385421)
chr3 (460-502)||(25790890-25790932)
chr3 (350-407)||(29081693-29081751)
chr3 (444-474)||(53299829-53299859)
chr3 (450-511)||(30734489-30734550)
chr3 (341-378)||(36738385-36738422)
chr3 (342-406)||(48342785-48342850)
chr3 (350-378)||(48342214-48342242)
chr3 (350-378)||(49159511-49159539)
[»] chr4 (28 HSPs)
chr4 (342-411)||(6607394-6607463)
chr4 (443-511)||(31846891-31846959)
chr4 (447-510)||(46321439-46321502)
chr4 (443-512)||(33380713-33380782)
chr4 (448-509)||(2254528-2254589)
chr4 (450-518)||(35682149-35682217)
chr4 (368-411)||(6608439-6608482)
chr4 (353-407)||(30023639-30023694)
chr4 (448-507)||(31012121-31012180)
chr4 (444-505)||(15031969-15032030)
chr4 (343-411)||(31846782-31846859)
chr4 (450-511)||(54613023-54613084)
chr4 (347-401)||(53261093-53261148)
chr4 (445-511)||(32224275-32224340)
chr4 (445-511)||(53937890-53937956)
chr4 (447-511)||(6271786-6271850)
chr4 (343-411)||(31012217-31012294)
chr4 (444-505)||(32008337-32008398)
chr4 (444-504)||(31846789-31846848)
chr4 (343-401)||(36273057-36273116)
chr4 (444-474)||(11392399-11392429)
chr4 (345-379)||(32008368-32008402)
chr4 (352-397)||(54223561-54223607)
chr4 (443-512)||(43063507-43063576)
chr4 (350-379)||(54613030-54613059)
chr4 (443-475)||(22435378-22435410)
chr4 (350-378)||(31846924-31846952)
chr4 (443-507)||(53261190-53261253)
[»] chr2 (25 HSPs)
chr2 (342-411)||(7755426-7755495)
chr2 (443-510)||(39819054-39819121)
chr2 (343-411)||(12918623-12918700)
chr2 (343-411)||(39819153-39819230)
chr2 (368-411)||(15562294-15562337)
chr2 (454-511)||(5913515-5913571)
chr2 (447-487)||(5095817-5095857)
chr2 (443-499)||(12918535-12918591)
chr2 (350-400)||(7755342-7755393)
chr2 (350-396)||(13421794-13421841)
chr2 (444-502)||(15562305-15562362)
chr2 (443-511)||(7755335-7755394)
chr2 (451-511)||(44000777-44000837)
chr2 (444-511)||(8940451-8940518)
chr2 (444-475)||(18182528-18182559)
chr2 (447-504)||(12918637-12918693)
chr2 (444-472)||(1355994-1356022)
chr2 (350-378)||(5913522-5913550)
chr2 (343-378)||(12918498-12918534)
chr2 (447-511)||(16514508-16514572)
chr2 (443-475)||(18182600-18182632)
chr2 (344-399)||(34563350-34563406)
chr2 (350-378)||(39819060-39819088)
chr2 (444-504)||(39819164-39819223)
chr2 (447-491)||(42342294-42342338)
[»] chr1 (35 HSPs)
chr1 (343-411)||(15928073-15928141)
chr1 (342-406)||(10449446-10449511)
chr1 (448-511)||(6539664-6539727)
chr1 (443-512)||(718980-719049)
chr1 (343-411)||(9379908-9379985)
chr1 (447-512)||(10449552-10449616)
chr1 (342-410)||(28045410-28045487)
chr1 (343-411)||(50754814-50754891)
chr1 (443-511)||(9379808-9379876)
chr1 (443-511)||(9884831-9884899)
chr1 (444-504)||(49200059-49200119)
chr1 (368-407)||(28739338-28739377)
chr1 (444-514)||(44291149-44291219)
chr1 (452-502)||(44381917-44381967)
chr1 (343-407)||(44938794-44938859)
chr1 (371-411)||(9884931-9884971)
chr1 (377-411)||(6539593-6539627)
chr1 (443-513)||(26011742-26011812)
chr1 (368-401)||(35251201-35251234)
chr1 (444-504)||(28045420-28045479)
chr1 (444-504)||(28739311-28739370)
chr1 (443-474)||(4579195-4579226)
chr1 (350-392)||(28739422-28739465)
chr1 (443-510)||(44938894-44938961)
chr1 (342-372)||(34026751-34026781)
chr1 (443-512)||(28739413-28739473)
chr1 (443-504)||(32787128-32787189)
chr1 (447-504)||(37155043-37155100)
chr1 (447-512)||(48993906-48993971)
chr1 (458-511)||(49515263-49515316)
chr1 (342-378)||(9884973-9885009)
chr1 (342-374)||(44381907-44381939)
chr1 (444-476)||(44382435-44382467)
chr1 (349-392)||(50754729-50754773)
chr1 (444-504)||(50754825-50754884)
[»] chr5 (23 HSPs)
chr5 (443-511)||(29385385-29385453)
chr5 (443-510)||(1839962-1840029)
chr5 (448-511)||(19417435-19417498)
chr5 (343-411)||(5215560-5215637)
chr5 (444-508)||(7137745-7137809)
chr5 (444-511)||(7137631-7137698)
chr5 (371-411)||(29385313-29385353)
chr5 (368-411)||(19417535-19417577)
chr5 (447-509)||(29699451-29699513)
chr5 (447-511)||(2953274-2953338)
chr5 (444-504)||(4376347-4376407)
chr5 (447-511)||(4376447-4376511)
chr5 (359-401)||(42772065-42772108)
chr5 (372-410)||(9177874-9177912)
chr5 (337-406)||(12605650-12605720)
chr5 (368-410)||(25879334-25879376)
chr5 (447-484)||(1638474-1638511)
chr5 (447-511)||(12913793-12913857)
chr5 (343-411)||(36568794-36568871)
chr5 (444-504)||(5215567-5215626)
chr5 (447-511)||(16971228-16971292)
chr5 (350-378)||(19417442-19417470)
chr5 (350-378)||(29385418-29385446)
[»] chr6 (10 HSPs)
chr6 (343-401)||(369519-369578)
chr6 (342-411)||(2543734-2543812)
chr6 (343-408)||(16193822-16193888)
chr6 (343-411)||(11448147-11448224)
chr6 (444-511)||(2913929-2913998)
chr6 (343-392)||(28581731-28581781)
chr6 (444-504)||(2543742-2543801)
chr6 (452-504)||(11448166-11448217)
chr6 (350-392)||(2543852-2543895)
chr6 (476-512)||(11448055-11448091)
[»] chr8 (9 HSPs)
chr8 (445-510)||(31470736-31470800)
chr8 (444-500)||(31470845-31470901)
chr8 (444-504)||(16687519-16687579)
chr8 (343-378)||(1605047-1605082)
chr8 (444-502)||(32857073-32857131)
chr8 (447-511)||(5033245-5033309)
chr8 (342-374)||(16687511-16687543)
chr8 (368-411)||(43465176-43465222)
chr8 (342-378)||(43465221-43465257)
[»] scaffold1315 (1 HSPs)
scaffold1315 (350-407)||(1819-1877)
[»] scaffold1293 (1 HSPs)
scaffold1293 (350-407)||(194-252)
[»] scaffold0343 (2 HSPs)
scaffold0343 (444-516)||(12308-12377)
scaffold0343 (343-378)||(12226-12261)
[»] scaffold0586 (1 HSPs)
scaffold0586 (447-487)||(7131-7171)


Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 342
Target Start/End: Original strand, 33693057 - 33693390
Alignment:
Q  9 aaatgaatacttattaaacacaagacaataattttgagttaaatagttgaatttatttattacaaccttcttagtaaagaattactcccaaaaattagtg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  33693057 aaatgaatacttattaaacacaagacaataattttgagttaaatagttggatttatttattacaaccttcttagaaaagaattactcccaaaaattactg 33693156  T
Q  109 gttacatgtgggttaggactggccaaaactactttaaccaattatgaggcataggatactggacaccttaggccagaaacctcttatccatcttcttcta 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33693157 gttacatgtgggttaggactggccaaaactactttaaccaattatgaggcataggatactggaaaccttaggccagaaacctcttatccatcttcttcta 33693256  T
Q  209 cagtcttgtcacatttttccccattttcatacggattgttagttcgtaatcaaggcatggtaggccatttggaatgggagtggaaccctgcccggctcta 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33693257 cagtcttgtcacatttttccccattttcatacggattgttagttcgtaatcaaggcatggtaggccatttggaatgggagtggaaccctgcccagctcta 33693356  T
Q  309 cctttagcaaagacaaataaggatcatatatagg 342  Q
    |||||| |||||||||||||||||||||||||||    
T  33693357 cctttaacaaagacaaataaggatcatatatagg 33693390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 511 - 563
Target Start/End: Original strand, 33693381 - 33693433
Alignment:
Q  511 catatataggtgtgtgttgtggtgatgtgtcttgtcacattttatgtctttta 563  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33693381 catatataggtgtgtgttgtggtgatgtgtcttgtcacattttatgtctttta 33693433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 345 - 411
Target Start/End: Complemental strand, 17272864 - 17272789
Alignment:
Q  345 ataatacttgggtgacattgtggttggtga---------cattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    ||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||    
T  17272864 ataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 17272789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 29681897 - 29681854
Alignment:
Q  368 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  29681897 ttggtgacattaccaaccacaatgttacaagtgtgtaaaacaac 29681854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 444 - 513
Target Start/End: Original strand, 24532795 - 24532863
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctacccat 513  Q
    ||||||||||||||||||||  ||||||||||  | |||||||||| ||||| |||||||||||||||||    
T  24532795 cacttgtgacattgtggttgatcaatgtcacag-tgtcaccaaccacaatgttacccaagtgctacccat 24532863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 29681940 - 29681905
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtgacatt 378  Q
    ||||||||||||||||||||||||||||||||||||    
T  29681940 ggataatacttgggtgacattgtggttggtgacatt 29681905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 4290629 - 4290693
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    ||||||||||||| |||||||||||||| ||| ||||| | |   ||||||||||||||||||||    
T  4290629 ttgtgacattgtgattggccaatgtcaccaatgtcacccaactgtatgtcacccaagtgctaccc 4290693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 504
Target Start/End: Original strand, 17272800 - 17272859
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    ||||||| |||||||||||||  |||||||| ||| |||||||||| ||||||||||||||    
T  17272800 cacttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 17272859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 392
Target Start/End: Original strand, 7211866 - 7211909
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt-accaaccacaatgt 392  Q
    |||||||||||||||||||||||||||||  |||||||||||||    
T  7211866 acttgggtgacattgtggttggtgacattggccaaccacaatgt 7211909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 392
Target Start/End: Original strand, 17272705 - 17272748
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt-accaaccacaatgt 392  Q
    |||||||||||||||||||||||||||||  |||||||||||||    
T  17272705 acttgggtgacattgtggttggtgacattggccaaccacaatgt 17272748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 443 - 493
Target Start/End: Complemental strand, 7169753 - 7169703
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataat 493  Q
    |||||||| ||||||||||||  |||| |||||||||||| ||||||||||    
T  7169753 ccacttgtaacattgtggttgatcaatatcacaaatatcatcaaccataat 7169703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 407
Target Start/End: Original strand, 32315713 - 32315771
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtgtgcaaaa 407  Q
    ||||| |||||||||||||||||||||||  ||||||||||||| |||| ||| |||||    
T  32315713 acttgcgtgacattgtggttggtgacattggccaaccacaatgtcacaattgtacaaaa 32315771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 397
Target Start/End: Complemental strand, 43500114 - 43500085
Alignment:
Q  368 ttggtgacattaccaaccacaatgttacaa 397  Q
    ||||||||||||||||||||||||||||||    
T  43500114 ttggtgacattaccaaccacaatgttacaa 43500085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 475
Target Start/End: Original strand, 6980957 - 6980989
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcaca 475  Q
    |||||||| ||||||||||||||||||||||||    
T  6980957 ccacttgtaacattgtggttggccaatgtcaca 6980989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 11016953 - 11017017
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    ||||||||||||| |||| ||||||||| ||| ||||| | |   ||||||||||||||||||||    
T  11016953 ttgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctaccc 11017017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 475
Target Start/End: Complemental strand, 42494830 - 42494798
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcaca 475  Q
    |||||||||||||||||||| ||||||||||||    
T  42494830 ccacttgtgacattgtggtttgccaatgtcaca 42494798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 343 - 411
Target Start/End: Complemental strand, 31342165 - 31342097
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31342165 ggataatatttgggtgacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 31342097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 20287063 - 20286994
Alignment:
Q  342 gggataatacttgggtgacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20287063 gggaaaatatttgggtgacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 20286994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 443 - 505
Target Start/End: Complemental strand, 20286962 - 20286900
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtg 505  Q
    |||| ||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||    
T  20286962 ccacatgtgacattgtggttggccaatgtcatcaatgtcaccaaccataatgtcacccaagtg 20286900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 340 - 409
Target Start/End: Complemental strand, 11512557 - 11512479
Alignment:
Q  340 aggggataatacttgggtgacattgtggttggtgacatt---------accaaccacaatgttacaagtgtgcaaaaca 409  Q
    |||||||||||||||||||||||| ||||||||||||||         |||||||||||||||||||||||||||||||    
T  11512557 aggggataatacttgggtgacattatggttggtgacattggtgacattaccaaccacaatgttacaagtgtgcaaaaca 11512479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 22893890 - 22893968
Alignment:
Q  342 gggataatacttgggtgacattgtggttgg---------tgacattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    ||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||| |||||||||    
T  22893890 gggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtacaaaacaac 22893968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 458 - 511
Target Start/End: Original strand, 49159493 - 49159546
Alignment:
Q  458 tggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    ||||||||||||||||| ||| |||||||||| |||||||||||||||||||||    
T  49159493 tggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagtgctaccc 49159546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 400
Target Start/End: Complemental strand, 22894051 - 22894000
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtg 400  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  22894051 acttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtg 22894000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 445 - 508
Target Start/End: Complemental strand, 29081655 - 29081592
Alignment:
Q  445 acttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgcta 508  Q
    |||||||||||||||||||| |||||||||  || |||||||||| |||||||||||| |||||    
T  29081655 acttgtgacattgtggttggtcaatgtcaccgatgtcaccaaccacaatgtcacccaaatgcta 29081592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 511
Target Start/End: Complemental strand, 48342269 - 48342207
Alignment:
Q  448 tgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    |||| ||||||||||||| |||||||||| | |||||||||| |||||||||||||||||||||    
T  48342269 tgtggcattgtggttggctaatgtcacaa-tgtcaccaaccacaatgtcacccaagtgctaccc 48342207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 504
Target Start/End: Original strand, 11512488 - 11512547
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    ||||||| |||||||||||||  |||||||| ||| |||||||||||||||||||||||||    
T  11512488 cacttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccataatgtcacccaagt 11512547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 504
Target Start/End: Complemental strand, 22893957 - 22893898
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    ||||||| |||||||||||||  |||||||| ||| |||||||||| ||||||||||||||    
T  22893957 cacttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 22893898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 512
Target Start/End: Original strand, 32385467 - 32385526
Alignment:
Q  452 acattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccca 512  Q
    |||||||||||||||||| |||| ||||||| |||||| ||| ||||| ||||||||||||    
T  32385467 acattgtggttggccaatatcac-aatatcatcaaccacaatatcacctaagtgctaccca 32385526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 392
Target Start/End: Original strand, 11512393 - 11512436
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt-accaaccacaatgt 392  Q
    |||||||||||||||||||||||||||||  |||||||||||||    
T  11512393 acttgggtgacattgtggttggtgacattggccaaccacaatgt 11512436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 475
Target Start/End: Original strand, 26960939 - 26960970
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcaca 475  Q
    ||||||||||||||||||||||||||||||||    
T  26960939 cacttgtgacattgtggttggccaatgtcaca 26960970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 406
Target Start/End: Original strand, 32385358 - 32385421
Alignment:
Q  344 gataatacttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtgtgcaaa 406  Q
    ||||||| ||||||||||||||| |||||||||||   |||||||||||| |||||||| ||||    
T  32385358 gataatatttgggtgacattgtgattggtgacattggtcaaccacaatgtgacaagtgtacaaa 32385421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 460 - 502
Target Start/End: Original strand, 25790890 - 25790932
Alignment:
Q  460 gttggccaatgtcacaaatatcaccaaccataatgtcacccaa 502  Q
    ||||| ||||||||| ||| |||||||||||||||||||||||    
T  25790890 gttggtcaatgtcaccaatgtcaccaaccataatgtcacccaa 25790932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 407
Target Start/End: Complemental strand, 29081751 - 29081693
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtgtgcaaaa 407  Q
    |||||||||| ||||||||||||||||||   |||||||||||| |||||||| |||||    
T  29081751 acttgggtgatattgtggttggtgacattggtcaaccacaatgtcacaagtgtacaaaa 29081693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 474
Target Start/End: Original strand, 53299829 - 53299859
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcac 474  Q
    |||||||||||||||||||||||||||||||    
T  53299829 cacttgtgacattgtggttggccaatgtcac 53299859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 511
Target Start/End: Original strand, 30734489 - 30734550
Alignment:
Q  450 tgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    |||||||||| |||||||||||||| ||| ||||| | |   ||||||||||||||||||||    
T  30734489 tgacattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagtgctaccc 30734550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 36738422 - 36738385
Alignment:
Q  341 ggggataatacttgggtgacattgtggttggtgacatt 378  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  36738422 ggggaaaatatttgggtgacattgtggttggtgacatt 36738385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 406
Target Start/End: Original strand, 48342785 - 48342850
Alignment:
Q  342 gggataatacttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtgtgcaaa 406  Q
    |||||||||||||||||||||| ||||||| ||||||   |||||||||||| |||| ||| ||||    
T  48342785 gggataatacttgggtgacattatggttggcgacattggtcaaccacaatgtcacaaatgtacaaa 48342850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 378
Target Start/End: Original strand, 48342214 - 48342242
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt 378  Q
    |||||||||||||||||||||||||||||    
T  48342214 acttgggtgacattgtggttggtgacatt 48342242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 378
Target Start/End: Complemental strand, 49159539 - 49159511
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt 378  Q
    |||||||||||||||||||||||||||||    
T  49159539 acttgggtgacattgtggttggtgacatt 49159511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 6607394 - 6607463
Alignment:
Q  342 gggataatacttgggtgacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6607394 gggacaatacttaggtgacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 6607463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 443 - 511
Target Start/End: Original strand, 31846891 - 31846959
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    |||| |||||||||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||    
T  31846891 ccacatgtgacattgtggttggccaatatcaccaatgtcaccaaccacaatgtcacccaagtgctaccc 31846959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 447 - 510
Target Start/End: Original strand, 46321439 - 46321502
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctacc 510  Q
    |||||||||||||||||| ||||||||| |||||||||||||| |||||||| |||||||||||    
T  46321439 ttgtgacattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcactcaagtgctacc 46321502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 443 - 512
Target Start/End: Original strand, 33380713 - 33380782
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccca 512  Q
    |||||| ||||||| |||||| | ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  33380713 ccacttatgacattatggttgacaaatgtcacaaatatcaccaaccacaatgtcatccaagtgctaccca 33380782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 448 - 509
Target Start/End: Complemental strand, 2254589 - 2254528
Alignment:
Q  448 tgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctac 509  Q
    ||||||||||||||||| ||||||||  |||||||||||||||||||| |||||| ||||||    
T  2254589 tgtgacattgtggttggtcaatgtcatcaatatcaccaaccataatgtgacccaaatgctac 2254528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 450 - 518
Target Start/End: Complemental strand, 35682217 - 35682149
Alignment:
Q  450 tgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctacccatatata 518  Q
    |||||||||| |||||||||||||| ||||||||| | |   |||||||||||||||||||||||||||    
T  35682217 tgacattgtgattggccaatgtcaccaatatcacctaactctatgtcacccaagtgctacccatatata 35682149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 6608482 - 6608439
Alignment:
Q  368 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  6608482 ttggtgacattaccaaccacaatgttacaagtctgcaaaacaac 6608439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 407
Target Start/End: Complemental strand, 30023694 - 30023639
Alignment:
Q  353 tgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtgtgcaaaa 407  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||| |||||    
T  30023694 tgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtacaaaa 30023639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 448 - 507
Target Start/End: Complemental strand, 31012180 - 31012121
Alignment:
Q  448 tgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgct 507  Q
    ||||||||||||||||| ||||||||| | |||||||||||| |||||||| ||||||||    
T  31012180 tgtgacattgtggttggtcaatgtcaccattatcaccaaccacaatgtcacacaagtgct 31012121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 444 - 505
Target Start/End: Complemental strand, 15032030 - 15031969
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtg 505  Q
    ||||| ||| ||||||||||| ||||||||| ||||||| |||||| |||||||||||||||    
T  15032030 cacttatgatattgtggttggtcaatgtcacgaatatcatcaaccacaatgtcacccaagtg 15031969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 411
Target Start/End: Original strand, 31846782 - 31846859
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtga---------cattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    ||||||||||||||||||||| ||||||||||         |||||||||||| ||||||||||||||||||||||||    
T  31846782 ggataatacttgggtgacattatggttggtgacattcgtgacattaccaaccaaaatgttacaagtgtgcaaaacaac 31846859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 511
Target Start/End: Complemental strand, 54613084 - 54613023
Alignment:
Q  450 tgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    ||||||||||||||| ||||| ||| ||| |||||||||| |||||||||||||| ||||||    
T  54613084 tgacattgtggttggtcaatgccactaatgtcaccaaccacaatgtcacccaagttctaccc 54613023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 53261093 - 53261148
Alignment:
Q  347 aatacttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtgt 401  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||| ||| ||||    
T  53261093 aatacttaggtgacattgtggttggtgacattgaccaaccacaatgtcacatgtgt 53261148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 511
Target Start/End: Complemental strand, 32224340 - 32224275
Alignment:
Q  445 acttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    |||||||||||||| ||||  ||||||||||| |||||||||||| |||||||| ||||| ||||||    
T  32224340 acttgtgacattgtagttgatcaatgtcacaa-tatcaccaaccacaatgtcacgcaagttctaccc 32224275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 445 - 511
Target Start/End: Complemental strand, 53937956 - 53937890
Alignment:
Q  445 acttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    |||||||||||||||||||| |||| |||| ||| |||| ||||| ||||| || ||||||||||||    
T  53937956 acttgtgacattgtggttggtcaatatcactaatgtcactaaccacaatgttactcaagtgctaccc 53937890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 6271786 - 6271850
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcac-caaccataatgtcacccaagtgctaccc 511  Q
    ||||||||||||| |||||||||||||| |||||||| ||||  | ||||||||||||||||||||    
T  6271786 ttgtgacattgtgattggccaatgtcaccaatatcactcaactct-atgtcacccaagtgctaccc 6271850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 343 - 411
Target Start/End: Complemental strand, 31012294 - 31012217
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtgacatta---------ccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    ||||||||||| |||||||||||||||||||||||||         ||||||||||| |||||||| |||||||||||    
T  31012294 ggataatacttaggtgacattgtggttggtgacattagtgacattaccaaccacaatattacaagtatgcaaaacaac 31012217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 505
Target Start/End: Original strand, 32008337 - 32008398
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtg 505  Q
    ||||||| ||||| ||||||| |||| |||| ||| |||||||||| |||||||||||||||    
T  32008337 cacttgtaacattttggttggtcaatatcactaatgtcaccaaccacaatgtcacccaagtg 32008398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 504
Target Start/End: Complemental strand, 31846848 - 31846789
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    ||||||| ||||| |||||||  |||||||| ||| |||||||||||||||||||||||||    
T  31846848 cacttgtaacattttggttggt-aatgtcacgaatgtcaccaaccataatgtcacccaagt 31846789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 401
Target Start/End: Complemental strand, 36273116 - 36273057
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtgt 401  Q
    |||||| ||||||||||||||||||| ||||| ||| |||||||||||| | ||||||||    
T  36273116 ggataacacttgggtgacattgtggtcggtgatattgaccaaccacaatatcacaagtgt 36273057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 474
Target Start/End: Original strand, 11392399 - 11392429
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcac 474  Q
    |||||||||||||||||||||||||||||||    
T  11392399 cacttgtgacattgtggttggccaatgtcac 11392429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 345 - 379
Target Start/End: Complemental strand, 32008402 - 32008368
Alignment:
Q  345 ataatacttgggtgacattgtggttggtgacatta 379  Q
    |||| ||||||||||||||||||||||||||||||    
T  32008402 ataacacttgggtgacattgtggttggtgacatta 32008368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 397
Target Start/End: Original strand, 54223561 - 54223607
Alignment:
Q  352 ttgggtgacattgtggttggtgacatt-accaaccacaatgttacaa 397  Q
    |||| |||||||||||||||||||||| |||||||||||||| ||||    
T  54223561 ttggatgacattgtggttggtgacattgaccaaccacaatgtcacaa 54223607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 512
Target Start/End: Complemental strand, 43063576 - 43063507
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccca 512  Q
    ||||||||||||||||||||||| |||||||| ||| ||| |||   | || |||||||| |||||||||    
T  43063576 ccacttgtgacattgtggttggctaatgtcaccaatgtcatcaaattttatatcacccaaatgctaccca 43063507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 379
Target Start/End: Original strand, 54613030 - 54613059
Alignment:
Q  350 acttgggtgacattgtggttggtgacatta 379  Q
    ||||||||||||||||||||||||||||||    
T  54613030 acttgggtgacattgtggttggtgacatta 54613059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 475
Target Start/End: Complemental strand, 22435410 - 22435378
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcaca 475  Q
    |||||||||||||||||||| ||||||||||||    
T  22435410 ccacttgtgacattgtggtttgccaatgtcaca 22435378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 378
Target Start/End: Complemental strand, 31846952 - 31846924
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt 378  Q
    |||||||||||||||||||||||||||||    
T  31846952 acttgggtgacattgtggttggtgacatt 31846924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 507
Target Start/End: Original strand, 53261190 - 53261253
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgct 507  Q
    ||||||||||  || |||||||||||| |||||| | |||||||||| ||| |||||||||||||    
T  53261190 ccacttgtgatgttatggttggccaatatcacaa-tgtcaccaaccacaatttcacccaagtgct 53261253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 342 - 411
Target Start/End: Complemental strand, 7755495 - 7755426
Alignment:
Q  342 gggataatacttgggtgacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  7755495 gggataatatttgggtgacattgtggttggtgacattaccaatcacaatgttacaagtgtacaaaacaac 7755426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 443 - 510
Target Start/End: Complemental strand, 39819121 - 39819054
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctacc 510  Q
    |||| ||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||    
T  39819121 ccacatgtgacattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagtgctacc 39819054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 411
Target Start/End: Complemental strand, 12918700 - 12918623
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtgacatt---------accaaccacaatgttacaagtgtgcaaaacaac 411  Q
    ||||||||||||||||||||||||||||||||||||         ||||||||||||||||||| |||||||||||||    
T  12918700 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaaatgtgcaaaacaac 12918623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 411
Target Start/End: Complemental strand, 39819230 - 39819153
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtgacatt---------accaaccacaatgttacaagtgtgcaaaacaac 411  Q
    ||||||||||||||||||||||||||||||||||||         |||||||||||| ||||||||||||||||||||    
T  39819230 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatattacaagtgtgcaaaacaac 39819153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 15562337 - 15562294
Alignment:
Q  368 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    |||||||||||||||| |||||||||||||||||||||||||||    
T  15562337 ttggtgacattaccaatcacaatgttacaagtgtgcaaaacaac 15562294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 454 - 511
Target Start/End: Complemental strand, 5913571 - 5913515
Alignment:
Q  454 attgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    ||||||||||||||||||||||| | |||||||||| ||||||||||||||| |||||    
T  5913571 attgtggttggccaatgtcacaa-tgtcaccaaccacaatgtcacccaagtgttaccc 5913515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 487
Target Start/End: Original strand, 5095817 - 5095857
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcaccaac 487  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  5095817 ttgtgacattgtggttggccaatgtcaccaatatcaccaac 5095857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 443 - 499
Target Start/End: Complemental strand, 12918591 - 12918535
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacc 499  Q
    |||| ||||||||||||||||||||||||||| ||| ||| |||||| |||||||||    
T  12918591 ccacatgtgacattgtggttggccaatgtcaccaatgtcatcaaccacaatgtcacc 12918535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 400
Target Start/End: Original strand, 7755342 - 7755393
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtg 400  Q
    |||||||||||||||||||||||||||||  ||||||||||||| |||||||    
T  7755342 acttgggtgacattgtggttggtgacattggccaaccacaatgtcacaagtg 7755393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 350 - 396
Target Start/End: Complemental strand, 13421841 - 13421794
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt-accaaccacaatgttaca 396  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  13421841 acttgggtgacattgtggttggtgacattgaccaaccacaacgttaca 13421794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 502
Target Start/End: Original strand, 15562305 - 15562362
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaa 502  Q
    ||||||| |||||||| ||||  |||||||| |||||||||||||||||||||||||||    
T  15562305 cacttgtaacattgtgattggt-aatgtcaccaatatcaccaaccataatgtcacccaa 15562362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 511
Target Start/End: Complemental strand, 7755394 - 7755335
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    ||||||||||||||||||||||||||||         |||||||||| |||||||||||||||||||||    
T  7755394 ccacttgtgacattgtggttggccaatg---------tcaccaaccacaatgtcacccaagtgctaccc 7755335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 511
Target Start/End: Complemental strand, 44000837 - 44000777
Alignment:
Q  451 gacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    ||||||||||||| ||| |||||| ||||||| ||| |||||| ||||||||||| |||||    
T  44000837 gacattgtggttgaccagtgtcaccaatatcatcaatcataatatcacccaagtgttaccc 44000777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 511
Target Start/End: Complemental strand, 8940518 - 8940451
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    |||||||||||||||| ||| |||||  |||||||||   |||||| ||||||||||| |||||||||    
T  8940518 cacttgtgacattgtgattgaccaataccacaaatattttcaaccacaatgtcacccatgtgctaccc 8940451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 475
Target Start/End: Complemental strand, 18182559 - 18182528
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcaca 475  Q
    ||||||||||||||||||||||||||||||||    
T  18182559 cacttgtgacattgtggttggccaatgtcaca 18182528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 504
Target Start/End: Original strand, 12918637 - 12918693
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    |||| |||||||||||||  |||||||| ||| |||||||||| ||||||||||||||    
T  12918637 ttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 12918693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 472
Target Start/End: Original strand, 1355994 - 1356022
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtc 472  Q
    |||||||||||||||||||||||||||||    
T  1355994 cacttgtgacattgtggttggccaatgtc 1356022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 378
Target Start/End: Original strand, 5913522 - 5913550
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt 378  Q
    |||||||||||||||||||||||||||||    
T  5913522 acttgggtgacattgtggttggtgacatt 5913550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 12918498 - 12918534
Alignment:
Q  343 ggataatactt-gggtgacattgtggttggtgacatt 378  Q
    ||||||||||| |||||||||||||||||||||||||    
T  12918498 ggataatactttgggtgacattgtggttggtgacatt 12918534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 16514508 - 16514572
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    ||||||||||||| |||| ||||||||| ||| ||||| | |   ||||||||||||||||||||    
T  16514508 ttgtgacattgtgattggtcaatgtcaccaatctcacccaactctatgtcacccaagtgctaccc 16514572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 475
Target Start/End: Original strand, 18182600 - 18182632
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcaca 475  Q
    |||||||||||||||||||| ||||||||||||    
T  18182600 ccacttgtgacattgtggtttgccaatgtcaca 18182632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 34563406 - 34563350
Alignment:
Q  344 gataatacttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagt 399  Q
    |||||||||| |||||||| ||||||||||||||| ||||||  |||||| ||||||    
T  34563406 gataatactttggtgacatcgtggttggtgacattgaccaacttcaatgtcacaagt 34563350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 378
Target Start/End: Original strand, 39819060 - 39819088
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt 378  Q
    |||||||||||||||||||||||||||||    
T  39819060 acttgggtgacattgtggttggtgacatt 39819088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 504
Target Start/End: Original strand, 39819164 - 39819223
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    ||||||| | |||||||||||  |||||||| ||| |||||||||| ||||||||||||||    
T  39819164 cacttgtaatattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 39819223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 42342294 - 42342338
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcaccaaccata 491  Q
    |||| |||||||||||||  |||||||||| ||||||||||||||    
T  42342294 ttgtaacattgtggttggagaatgtcacaactatcaccaaccata 42342338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 343 - 411
Target Start/End: Original strand, 15928073 - 15928141
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||    
T  15928073 ggataatacttgggtgacattgtgattggtgacattatcaaccacaatgttacaagtgtacaaaacaac 15928141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 342 - 406
Target Start/End: Original strand, 10449446 - 10449511
Alignment:
Q  342 gggataatacttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtgtgcaaa 406  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||    
T  10449446 gggataatacttgggtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgtacaaa 10449511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 448 - 511
Target Start/End: Original strand, 6539664 - 6539727
Alignment:
Q  448 tgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    |||||||||||||||| |||||||||| ||||||| |||||| |||||||||||||||||||||    
T  6539664 tgtgacattgtggttgaccaatgtcaccaatatcatcaaccacaatgtcacccaagtgctaccc 6539727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 443 - 512
Target Start/End: Complemental strand, 719049 - 718980
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccca 512  Q
    ||||||||||||||||||||| |||||| | | ||| |||||||||| |||||||| |||||||||||||    
T  719049 ccacttgtgacattgtggttgtccaatgccgccaatgtcaccaaccacaatgtcactcaagtgctaccca 718980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 411
Target Start/End: Complemental strand, 9379985 - 9379908
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtgacatt---------accaaccacaatgttacaagtgtgcaaaacaac 411  Q
    |||||||| |||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  9379985 ggataatatttgggtgacattgtggttggtgacattggtaacattaccaaccacaatgttacaagtgtgcaaaacaac 9379908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 447 - 512
Target Start/End: Original strand, 10449552 - 10449616
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccca 512  Q
    ||||||||||||||||| |||||||||| ||| |||||||||| ||||||| ||||||||||||||    
T  10449552 ttgtgacattgtggttgaccaatgtcac-aatgtcaccaaccacaatgtcatccaagtgctaccca 10449616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 410
Target Start/End: Complemental strand, 28045487 - 28045410
Alignment:
Q  342 gggataatacttgggtgacattgtggttggtgacatt---------accaaccacaatgttacaagtgtgcaaaacaa 410  Q
    |||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||| ||||||||    
T  28045487 gggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtacaaaacaa 28045410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 411
Target Start/End: Complemental strand, 50754891 - 50754814
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtgacatt---------accaaccacaatgttacaagtgtgcaaaacaac 411  Q
    ||||||||||||||||||||||||||||||||||||         | |||||||||||||||||||||||||||||||    
T  50754891 ggataatacttgggtgacattgtggttggtgacattggtgacattatcaaccacaatgttacaagtgtgcaaaacaac 50754814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 443 - 511
Target Start/End: Complemental strand, 9379876 - 9379808
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    |||| |||||||||||||||||||||| |||| ||| ||||||||||  || |||||||||||||||||    
T  9379876 ccacatgtgacattgtggttggccaatatcaccaatgtcaccaaccacgatatcacccaagtgctaccc 9379808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 443 - 511
Target Start/End: Complemental strand, 9884899 - 9884831
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    |||| |||||||||||||||| |||||||||| ||| ||||||||||  |||||||| |||||||||||    
T  9884899 ccacatgtgacattgtggttgaccaatgtcaccaatgtcaccaaccactatgtcaccaaagtgctaccc 9884831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 444 - 504
Target Start/End: Original strand, 49200059 - 49200119
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    ||||||||||||||||||||| ||||||||  |||||||||||||| ||||||||| ||||    
T  49200059 cacttgtgacattgtggttggtcaatgtcatcaatatcaccaaccacaatgtcacctaagt 49200119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 368 - 407
Target Start/End: Original strand, 28739338 - 28739377
Alignment:
Q  368 ttggtgacattaccaaccacaatgttacaagtgtgcaaaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  28739338 ttggtgacattaccaaccacaatgttacaagtgtgcaaaa 28739377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 444 - 514
Target Start/End: Original strand, 44291149 - 44291219
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctacccata 514  Q
    |||||||||||||||||||| |||||||||| ||||| |||||||| ||||| | ||||| |||| |||||    
T  44291149 cacttgtgacattgtggttgaccaatgtcaccaatataaccaaccacaatgttatccaagcgctatccata 44291219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 452 - 502
Target Start/End: Complemental strand, 44381967 - 44381917
Alignment:
Q  452 acattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaa 502  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||||||||    
T  44381967 acattgtggttggtcaatgtcaccaatatcaccaaccacaatgtcacccaa 44381917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 343 - 407
Target Start/End: Original strand, 44938794 - 44938859
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtgtgcaaaa 407  Q
    |||||| |||||||||||||||||||| |||||||| |||||||| ||||| |||||||| |||||    
T  44938794 ggataacacttgggtgacattgtggttagtgacattgaccaaccagaatgtcacaagtgtacaaaa 44938859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 411
Target Start/End: Complemental strand, 9884971 - 9884931
Alignment:
Q  371 gtgacattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  9884971 gtgacattatcaaccacaatgttacaagtgtgcaaaacaac 9884931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 411
Target Start/End: Original strand, 6539593 - 6539627
Alignment:
Q  377 ttaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    |||||||||||||||||||||||||||||||||||    
T  6539593 ttaccaaccacaatgttacaagtgtgcaaaacaac 6539627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 513
Target Start/End: Original strand, 26011742 - 26011812
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctacccat 513  Q
    |||||||| | ||||||||||| ||||||||| ||| |||||| | |||||||||| |||||| |||||||    
T  26011742 ccacttgttatattgtggttggtcaatgtcaccaatgtcaccatctataatgtcactcaagtgttacccat 26011812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 368 - 401
Target Start/End: Original strand, 35251201 - 35251234
Alignment:
Q  368 ttggtgacattaccaaccacaatgttacaagtgt 401  Q
    ||||||||||||||||||||||||||||||||||    
T  35251201 ttggtgacattaccaaccacaatgttacaagtgt 35251234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 504
Target Start/End: Original strand, 28045420 - 28045479
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    ||||||| |||||||||||||  |||||||| ||| |||||||||| ||||||||||||||    
T  28045420 cacttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 28045479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 504
Target Start/End: Complemental strand, 28739370 - 28739311
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    ||||||| |||||||||||||  |||||||| |||||||||||||| ||| ||||||||||    
T  28739370 cacttgtaacattgtggttggt-aatgtcaccaatatcaccaaccacaatatcacccaagt 28739311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 474
Target Start/End: Complemental strand, 4579226 - 4579195
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcac 474  Q
    ||||||||||||||||||||||||||||||||    
T  4579226 ccacttgtgacattgtggttggccaatgtcac 4579195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 392
Target Start/End: Complemental strand, 28739465 - 28739422
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt-accaaccacaatgt 392  Q
    |||||||||||||||||||||||||||||  |||||||||||||    
T  28739465 acttgggtgacattgtggttggtgacattggccaaccacaatgt 28739422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 510
Target Start/End: Original strand, 44938894 - 44938961
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctacc 510  Q
    ||||||||  |||||||||||  ||||||||| ||| |||| || || ||||||||||||||||||||    
T  44938894 ccacttgtaccattgtggttgttcaatgtcactaatgtcactaatcacaatgtcacccaagtgctacc 44938961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 372
Target Start/End: Original strand, 34026751 - 34026781
Alignment:
Q  342 gggataatacttgggtgacattgtggttggt 372  Q
    |||||||||||||||||||||||||||||||    
T  34026751 gggataatacttgggtgacattgtggttggt 34026781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 512
Target Start/End: Original strand, 28739413 - 28739473
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccca 512  Q
    |||| |||||||||||||||||||||||||||         |||||| ||||||||||||||||||||||    
T  28739413 ccacatgtgacattgtggttggccaatgtcac---------caaccacaatgtcacccaagtgctaccca 28739473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 504
Target Start/End: Original strand, 32787128 - 32787189
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    |||||||||| |||||| |||| |||||||||||||||||| || || ||| ||||| ||||    
T  32787128 ccacttgtgatattgtgattggtcaatgtcacaaatatcacgaatcacaatatcacctaagt 32787189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 504
Target Start/End: Complemental strand, 37155100 - 37155043
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    ||||||||||||| |||||||||||||| ||| ||||||| |   |||||||||||||    
T  37155100 ttgtgacattgtgattggccaatgtcaccaatgtcaccaaactctatgtcacccaagt 37155043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 512
Target Start/End: Complemental strand, 48993971 - 48993906
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccca 512  Q
    ||||||||||||| |||| ||||||||| ||| ||||| | |   |||||||||||||||||||||    
T  48993971 ttgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctaccca 48993906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 511
Target Start/End: Complemental strand, 49515316 - 49515263
Alignment:
Q  458 tggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    ||||||| ||||||||| |||||||||||||| ||||||||  ||||| |||||    
T  49515316 tggttggtcaatgtcactaatatcaccaaccacaatgtcacataagtgttaccc 49515263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 9885009 - 9884973
Alignment:
Q  342 gggataatacttgggtgacattgtggttggtgacatt 378  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  9885009 gggatgatacttgggtgatattgtggttggtgacatt 9884973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 374
Target Start/End: Original strand, 44381907 - 44381939
Alignment:
Q  342 gggataatacttgggtgacattgtggttggtga 374  Q
    ||||||||| |||||||||||||||||||||||    
T  44381907 gggataatatttgggtgacattgtggttggtga 44381939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 476
Target Start/End: Original strand, 44382435 - 44382467
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaa 476  Q
    ||||||||| |||||||||||||||||||||||    
T  44382435 cacttgtgatattgtggttggccaatgtcacaa 44382467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 349 - 392
Target Start/End: Original strand, 50754729 - 50754773
Alignment:
Q  349 tacttgggtgacattgtggttggtgacatt-accaaccacaatgt 392  Q
    ||||| ||||||||||||||||||||||||  |||||||||||||    
T  50754729 tactttggtgacattgtggttggtgacattggccaaccacaatgt 50754773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 504
Target Start/End: Original strand, 50754825 - 50754884
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    ||||||| ||||||||||||   |||||||| ||| |||||||||| ||||||||||||||    
T  50754825 cacttgtaacattgtggttgat-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 50754884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 443 - 511
Target Start/End: Original strand, 29385385 - 29385453
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    |||| ||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||    
T  29385385 ccacatgtgacattgtggttggccaatgtcaccaatgtcaccaaccacaatgtcacccaagtgctaccc 29385453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 443 - 510
Target Start/End: Complemental strand, 1840029 - 1839962
Alignment:
Q  443 ccacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctacc 510  Q
    |||| ||||||||||||||||||||||||||  ||| |||||||||| |||||||||||| |||||||    
T  1840029 ccacatgtgacattgtggttggccaatgtcatcaatgtcaccaaccacaatgtcacccaattgctacc 1839962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 448 - 511
Target Start/End: Complemental strand, 19417498 - 19417435
Alignment:
Q  448 tgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    ||||||||||| |||| |||||||||| ||| |||||||||| |||||||||||||||||||||    
T  19417498 tgtgacattgtagttgaccaatgtcaccaatgtcaccaaccacaatgtcacccaagtgctaccc 19417435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 411
Target Start/End: Original strand, 5215560 - 5215637
Alignment:
Q  343 ggataatacttgggtgacattgtggttgg---------tgacattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    |||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||| |||||||||    
T  5215560 ggataatacttgggtgacattgtggttggtaacattggtgacattaccaaccacaatgttacaagtgtacaaaacaac 5215637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 444 - 508
Target Start/End: Original strand, 7137745 - 7137809
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgcta 508  Q
    |||||||||||||||||||| ||||||||   ||| |||||||| ||||||||||||||||||||    
T  7137745 cacttgtgacattgtggttgaccaatgtcgtcaatgtcaccaactataatgtcacccaagtgcta 7137809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 444 - 511
Target Start/End: Complemental strand, 7137698 - 7137631
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    ||||||||||||||||||||| ||||||||| ||| ||||||||   |||||||||||||| ||||||    
T  7137698 cacttgtgacattgtggttggtcaatgtcaccaatttcaccaactgcaatgtcacccaagtactaccc 7137631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 29385313 - 29385353
Alignment:
Q  371 gtgacattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  29385313 gtgatattaccaaccacaatgttacaagtgtgcaaaacaac 29385353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 19417577 - 19417535
Alignment:
Q  368 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  19417577 ttggtgacattaccaaccacaatgtt-caagtgtgcaaaacaac 19417535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 447 - 509
Target Start/End: Original strand, 29699451 - 29699513
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctac 509  Q
    ||||||||||||| |||||||||||||| ||||||||| | |   ||||||||||||||||||    
T  29699451 ttgtgacattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagtgctac 29699513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 2953274 - 2953338
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    ||||||||||||| |||||||||||||| ||| ||||| | |   ||||||||||||||||||||    
T  2953274 ttgtgacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtgctaccc 2953338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 504
Target Start/End: Complemental strand, 4376407 - 4376347
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    |||||||||||||||||||| |||||| ||| ||| | |||||||| |||||||| |||||    
T  4376407 cacttgtgacattgtggttgaccaatggcacgaatgttaccaaccacaatgtcactcaagt 4376347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 4376447 - 4376511
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    |||||||||||| ||||| || |||||| ||| ||| |||||| |||||||| ||||||||||||    
T  4376447 ttgtgacattgttgttggtcattgtcaccaatgtcatcaaccacaatgtcactcaagtgctaccc 4376511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 401
Target Start/End: Complemental strand, 42772108 - 42772065
Alignment:
Q  359 acattgtggttggtgacatt-accaaccacaatgttacaagtgt 401  Q
    |||||||||||||||||||| |||||||||||||| ||||||||    
T  42772108 acattgtggttggtgacattgaccaaccacaatgtcacaagtgt 42772065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 410
Target Start/End: Original strand, 9177874 - 9177912
Alignment:
Q  372 tgacattaccaaccacaatgttacaagtgtgcaaaacaa 410  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  9177874 tgacactaccaaccacaatgttataagtgtgcaaaacaa 9177912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 406
Target Start/End: Complemental strand, 12605720 - 12605650
Alignment:
Q  337 tataggggataatacttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtgtgcaaa 406  Q
    |||| ||||||||||||  |||||||||||||||||||||||   |||||||||||| ||| |||| ||||    
T  12605720 tatacgggataatacttaagtgacattgtggttggtgacattggtcaaccacaatgtcacacgtgtacaaa 12605650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 410
Target Start/End: Original strand, 25879334 - 25879376
Alignment:
Q  368 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaa 410  Q
    |||||||||||| |||||||||||||||||||||  |||||||    
T  25879334 ttggtgacattatcaaccacaatgttacaagtgtataaaacaa 25879376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 484
Target Start/End: Complemental strand, 1638511 - 1638474
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcacc 484  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  1638511 ttgtgacattgtgattggccaatatcacaaatatcacc 1638474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 511
Target Start/End: Complemental strand, 12913857 - 12913793
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcac-caaccataatgtcacccaagtgctaccc 511  Q
    ||||||||||||| |||||||||||||| ||| |||| |||| || ||||||| ||||||||||||    
T  12913857 ttgtgacattgtgattggccaatgtcaccaatgtcactcaactat-atgtcacacaagtgctaccc 12913793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 411
Target Start/End: Complemental strand, 36568871 - 36568794
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtgacattac---------caaccacaatgttacaagtgtgcaaaacaac 411  Q
    |||||||||||  ||||||||||||||||||||||||          ||||||||||||||||||||| |||||||||    
T  36568871 ggataatacttatgtgacattgtggttggtgacattagtgacataatcaaccacaatgttacaagtgtacaaaacaac 36568794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 504
Target Start/End: Complemental strand, 5215626 - 5215567
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    ||||||| |||||||||||||  |||||||| ||| | |||||||| ||||||||||||||    
T  5215626 cacttgtaacattgtggttggt-aatgtcaccaatgttaccaaccacaatgtcacccaagt 5215567  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 16971228 - 16971292
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    ||||||||||||| |||| ||||||||| ||| ||||| | |   ||||||||||||||||||||    
T  16971228 ttgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctaccc 16971292  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 378
Target Start/End: Original strand, 19417442 - 19417470
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt 378  Q
    |||||||||||||||||||||||||||||    
T  19417442 acttgggtgacattgtggttggtgacatt 19417470  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 350 - 378
Target Start/End: Complemental strand, 29385446 - 29385418
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt 378  Q
    |||||||||||||||||||||||||||||    
T  29385446 acttgggtgacattgtggttggtgacatt 29385418  T

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Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 343 - 401
Target Start/End: Complemental strand, 369578 - 369519
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtgt 401  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||    
T  369578 ggataatacttgagtgacattgtggttggtgacattgaccaaccacaatgtcacaagtgt 369519  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 342 - 411
Target Start/End: Original strand, 2543734 - 2543812
Alignment:
Q  342 gggataatacttgggtgacattgtggttgg---------tgacattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    ||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||| ||||||||    
T  2543734 gggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtgtaaaacaac 2543812  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 343 - 408
Target Start/End: Complemental strand, 16193888 - 16193822
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtgtgcaaaac 408  Q
    ||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||| ||||||    
T  16193888 ggataatacttgggtgacattgtggttggtgacattggtcaaccacaatgtcacaagtgtacaaaac 16193822  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 411
Target Start/End: Complemental strand, 11448224 - 11448147
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtga---------cattaccaaccacaatgttacaagtgtgcaaaacaac 411  Q
    ||||||||||||||||||||||||||||||||         |||||||||||||||||||| ||||||||||||||||    
T  11448224 ggataatacttgggtgacattgtggttggtgatattggtgacattaccaaccacaatgttataagtgtgcaaaacaac 11448147  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 511
Target Start/End: Original strand, 2913929 - 2913998
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataa--tgtcacccaagtgctaccc 511  Q
    ||||||||||| ||||||||  ||| ||||| |||||||||||||| ||  |||||||||||||||||||    
T  2913929 cacttgtgacactgtggttgatcaacgtcaccaatatcaccaaccacaatgtgtcacccaagtgctaccc 2913998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 392
Target Start/End: Original strand, 28581731 - 28581781
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtgacatt-accaaccacaatgt 392  Q
    ||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  28581731 ggataatacttggctgacattgtggttggtgacattggccaaccacaatgt 28581781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 444 - 504
Target Start/End: Complemental strand, 2543801 - 2543742
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    ||||||| |||||||||||||  |||||||| ||| |||||||||| ||||||||||||||    
T  2543801 cacttgtaacattgtggttggt-aatgtcaccaatgtcaccaaccacaatgtcacccaagt 2543742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 452 - 504
Target Start/End: Original strand, 11448166 - 11448217
Alignment:
Q  452 acattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    |||||||||||||  |||||||| |||||||||||||| ||||||||||||||    
T  11448166 acattgtggttggt-aatgtcaccaatatcaccaaccacaatgtcacccaagt 11448217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 392
Target Start/End: Complemental strand, 2543895 - 2543852
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt-accaaccacaatgt 392  Q
    |||||||||||||||||||||||||||||  |||||||||||||    
T  2543895 acttgggtgacattgtggttggtgacattggccaaccacaatgt 2543852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 512
Target Start/End: Complemental strand, 11448091 - 11448055
Alignment:
Q  476 aatatcaccaaccataatgtcacccaagtgctaccca 512  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  11448091 aatattaccaaccacaatgtcacccaagtgctaccca 11448055  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 445 - 510
Target Start/End: Complemental strand, 31470800 - 31470736
Alignment:
Q  445 acttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctacc 510  Q
    |||||||||||||||||||| ||||||||| ||| | |||||||||||||||||||||| ||||||    
T  31470800 acttgtgacattgtggttggtcaatgtcac-aatgttaccaaccataatgtcacccaagcgctacc 31470736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 444 - 500
Target Start/End: Original strand, 31470845 - 31470901
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcaccc 500  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||| ||| ||||||    
T  31470845 cacttgtgacattgtggttggccaatgtcaccaataccaccaaccacaatatcaccc 31470901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 504
Target Start/End: Complemental strand, 16687579 - 16687519
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagt 504  Q
    |||||| |||||||||||| || |||||||| |||||||||||||| ||||||| ||||||    
T  16687579 cacttgggacattgtggttagctaatgtcaccaatatcaccaaccacaatgtcatccaagt 16687519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 378
Target Start/End: Complemental strand, 1605082 - 1605047
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtgacatt 378  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1605082 ggataatacttgggtgacattgtagttggtgacatt 1605047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 444 - 502
Target Start/End: Original strand, 32857073 - 32857131
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaa 502  Q
    ||||||||||||||||||||||| ||||||  ||| ||| |||||| ||| ||||||||    
T  32857073 cacttgtgacattgtggttggcctatgtcatcaatgtcatcaaccacaatatcacccaa 32857131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 511
Target Start/End: Original strand, 5033245 - 5033309
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctaccc 511  Q
    ||||||||||||| |||| ||||||||| ||| ||||| | |   ||||||||||||||||||||    
T  5033245 ttgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtgctaccc 5033309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 374
Target Start/End: Original strand, 16687511 - 16687543
Alignment:
Q  342 gggataatacttgggtgacattgtggttggtga 374  Q
    |||||||||||||| ||||||||||||||||||    
T  16687511 gggataatacttggatgacattgtggttggtga 16687543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 411
Target Start/End: Complemental strand, 43465222 - 43465176
Alignment:
Q  368 ttggtgacattaccaa---ccacaatgttacaagtgtgcaaaacaac 411  Q
    ||||||| ||||||||   ||||||||||||||||||||||||||||    
T  43465222 ttggtgaaattaccaaccaccacaatgttacaagtgtgcaaaacaac 43465176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 342 - 378
Target Start/End: Complemental strand, 43465257 - 43465221
Alignment:
Q  342 gggataatacttgggtgacattgtggttggtgacatt 378  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  43465257 gggataatacttggatgacattctggttggtgacatt 43465221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 407
Target Start/End: Original strand, 1819 - 1877
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtgtgcaaaa 407  Q
    ||||||||||||||||||||||||||||| | |||||||||| | |||||||| |||||    
T  1819 acttgggtgacattgtggttggtgacattgatcaaccacaatatcacaagtgtacaaaa 1877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 407
Target Start/End: Complemental strand, 252 - 194
Alignment:
Q  350 acttgggtgacattgtggttggtgacatt-accaaccacaatgttacaagtgtgcaaaa 407  Q
    ||||||||||||||||||||||||||||| | |||||||||| | |||||||| |||||    
T  252 acttgggtgacattgtggttggtgacattgatcaaccacaatatcacaagtgtacaaaa 194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 444 - 516
Target Start/End: Original strand, 12308 - 12377
Alignment:
Q  444 cacttgtgacattgtggttggccaatgtcacaaatatcaccaaccataatgtcacccaagtgctacccatata 516  Q
    ||||||||||||||||||||| ||||||||||| | ||| |  ||| ||||||||||||||||||||| ||||    
T  12308 cacttgtgacattgtggttggtcaatgtcacaa-tgtcagc--ccacaatgtcacccaagtgctacccgtata 12377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 378
Target Start/End: Original strand, 12226 - 12261
Alignment:
Q  343 ggataatacttgggtgacattgtggttggtgacatt 378  Q
    ||||||||||||||||||||||| ||||||||||||    
T  12226 ggataatacttgggtgacattgtagttggtgacatt 12261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 487
Target Start/End: Original strand, 7131 - 7171
Alignment:
Q  447 ttgtgacattgtggttggccaatgtcacaaatatcaccaac 487  Q
    ||||||||||||| |||||||||||||| ||| ||||||||    
T  7131 ttgtgacattgtgattggccaatgtcaccaatgtcaccaac 7171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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