View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18156_low_15 (Length: 542)

Name: NF18156_low_15
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18156_low_15
NF18156_low_15
[»] chr3 (5 HSPs)
chr3 (17-531)||(10543859-10544370)
chr3 (108-425)||(37192891-37193208)
chr3 (102-216)||(31194202-31194316)
chr3 (102-216)||(52773997-52774111)
chr3 (108-211)||(53979080-53979183)
[»] chr5 (2 HSPs)
chr5 (102-422)||(19717706-19718026)
chr5 (264-425)||(19716508-19716669)
[»] chr8 (4 HSPs)
chr8 (108-425)||(2997317-2997634)
chr8 (299-354)||(25575143-25575198)
chr8 (299-354)||(20077426-20077481)
chr8 (108-211)||(15194062-15194165)
[»] chr6 (5 HSPs)
chr6 (108-346)||(34824690-34824928)
chr6 (108-425)||(33460454-33460771)
chr6 (249-346)||(5374237-5374333)
chr6 (299-346)||(25420574-25420621)
chr6 (108-220)||(26134405-26134517)
[»] scaffold0779 (1 HSPs)
scaffold0779 (299-354)||(4719-4774)
[»] chr2 (2 HSPs)
chr2 (299-361)||(18499115-18499177)
chr2 (299-361)||(26360786-26360848)
[»] chr4 (3 HSPs)
chr4 (108-211)||(18254929-18255032)
chr4 (102-216)||(13988947-13989061)
chr4 (299-346)||(2005593-2005640)
[»] scaffold0014 (1 HSPs)
scaffold0014 (102-216)||(94856-94970)
[»] chr7 (1 HSPs)
chr7 (108-216)||(16257487-16257595)
[»] scaffold0164 (1 HSPs)
scaffold0164 (108-211)||(26189-26292)
[»] chr1 (1 HSPs)
chr1 (108-211)||(49640116-49640219)


Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 17 - 531
Target Start/End: Complemental strand, 10544370 - 10543859
Alignment:
Q  17 aaatgccagttttgggtggatgcaagagccaatagaattctgattgtggttaactttgcaacaagagaaaaactgtcnnnnnnnn-----tcaagacctt 111  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |             ||||||||||    
T  10544370 aaatgccagttttgggtgaatgcaagagccaatagaattctgattgtggttaactttgcaacaggagaaaaactgccaaaaaaaaaaaaatcaagacctt 10544271  T
Q  112 caacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactccctatagg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||        ||||||||    
T  10544270 caacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttaaaaaccc--------cctatagg 10544179  T
Q  212 cttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactgacat 311  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||    
T  10544178 cttgacattaggaggagtttgcacaattgttcaggtactattcttagccaaaacatctaattcagaatccatagcctttacctaacattcagactgacat 10544079  T
Q  312 gcttccttataggttttgggctcaatactttgtgtaatagaaagagaaaatgccttgtgtgaatgtgataagtgtgtaagtgaatgaaatgatgcaatag 411  Q
    |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10544078 gctttcttataggttttgggctcagtactttgtgtaatagaaagagaaaatgccttgtgtgaatgtgataagtgtgaaagtgaatgaaatgatgcaatag 10543979  T
Q  412 ggtaaggagtaccttgtgtgattgttgctgatgaatgagcagaagaagtattacatacaaagtctgacaaataggttggggcatgttttgttctaacagg 511  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10543978 ggtaaggagtaccttatgtgattgttgttgatgaatgagcagaagaagtattacatacaaagtctgacaaataggttggggcatgttttgttctaacagg 10543879  T
Q  512 tttataaagttgaggtgatg 531  Q
    ||||||||||||||||||||    
T  10543878 tttataaagttgaggtgatg 10543859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 108 - 425
Target Start/End: Complemental strand, 37193208 - 37192891
Alignment:
Q  108 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 207  Q
    |||||||||||||||||||| || || |||| |||  |||||||| |||| || || ||||| ||||| |  || || ||||||||||| ||||| || |    
T  37193208 ccttcaacttgattatatcctttagccaccagtctagctttgtatctttctatactgccatctgccttgtgcttaattttataaacccacttactaccaa 37193109  T
Q  208 taggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactg 307  Q
    ||||||| |||||  |||||   |  ||||| |  || || ||||||||||| || || |||||||||||||||||||| |||| | || ||||||||||    
T  37193108 taggcttcacattgtgaggaagatcaacaatagaccaagttccattcttagctaatgcttctaattcagaatccatagcttttaaccaacattcagactg 37193009  T
Q  308 acatgcttccttataggttttgggctcaatactttgtgtaatagaaagagaaaatgccttgtgtgaatgtgataagtgtgtaagtgaatgaaatgatgca 407  Q
    ||  ||||| || |||||||| |||||| ||| |||||| | ||| | |||||| | ||| || ||   |||||  |||| |   |||||| ||||||||    
T  37193008 actagcttctttgtaggtttttggctcagtacattgtgtgacagacatagaaaaagacttttgggatgatgatagatgtgcataagaatgatatgatgca 37192909  T
Q  408 atagggtaaggagtacct 425  Q
    ||||||||| ||||||||    
T  37192908 atagggtaaagagtacct 37192891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 31194202 - 31194316
Alignment:
Q  102 tcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattac 201  Q
    |||| |||||||||||||||||| || || || |||| |||| | |||||  | || ||||||||||| ||||||| |||||| ||||| ||||| ||||    
T  31194202 tcaataccttcaacttgattataacctttagccaccagtctggccttgtacctctctatgctcccatctgccttatgtttgattttatacacccatttac 31194301  T
Q  202 tccctataggcttga 216  Q
    | || ||||| ||||    
T  31194302 taccaataggtttga 31194316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 52774111 - 52773997
Alignment:
Q  102 tcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattac 201  Q
    |||| |||||||||||||||||| || || || |||| |||| | |||||  | || ||||||||||| ||||||| |||||| ||||| ||||| ||||    
T  52774111 tcaataccttcaacttgattataacctttagccaccagtctggccttgtacctctctatgctcccatctgccttatgtttgattttatacacccatttac 52774012  T
Q  202 tccctataggcttga 216  Q
    | || ||||| ||||    
T  52774011 taccaataggtttga 52773997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 53979183 - 53979080
Alignment:
Q  108 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 207  Q
    |||||||||||| |||| || ||||| ||||||||  |||| ||| |||| ||  ||||||| | |||||  |||||||| |||||||| || |||||||    
T  53979183 ccttcaacttgagtatagccttttgctaccaatctagctttatatctttctatagtcccatctgacttatgcttgatcttgtaaacccatttgctcccta 53979084  T
Q  208 tagg 211  Q
    ||||    
T  53979083 tagg 53979080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 102 - 422
Target Start/End: Original strand, 19717706 - 19718026
Alignment:
Q  102 tcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattac 201  Q
    |||| |||||||||||||||||| |||||  | |||| |||  | |||||| ||||||| || |||||| | |||| |||||||||||| ||||| || |    
T  19717706 tcaataccttcaacttgattataacccttaaccaccagtcttgccttgtatctttcaatactaccatcaactttatgtttgatcttatacacccatttgc 19717805  T
Q  202 tccctataggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattc 301  Q
    | || || ||||| | |||||| |||   |  |||||||| || || ||||||| | | || |||||||||||| ||| ||||||||||| | |||  ||    
T  19717806 ttccaattggcttaatattaggtggaagatcaacaattgtccaagttccattctaatcgaatgcatctaattcaaaattcatagcctttaaccaatgctc 19717905  T
Q  302 agactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaagagaaaatgccttgtgtgaatgtgataagtgtgtaagtgaatgaaat 401  Q
    ||||||||| || ||||| |||||||| |||||| |||  | | ||| ||| | |||||| | ||| || ||| |||||||||||| || ||||||| ||    
T  19717906 agactgacaagcctccttgtaggtttttggctcagtacaatttttaacagacatagaaaaagacttatgggaaggtgataagtgtgcaaatgaatgatat 19718005  T
Q  402 gatgcaatagggtaaggagta 422  Q
    ||||||||||||||| |||||    
T  19718006 gatgcaatagggtaacgagta 19718026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 425
Target Start/End: Original strand, 19716508 - 19716669
Alignment:
Q  264 gcatctaattcagaatccatagcctttaccgaatattcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaagagaaaatg 363  Q
    |||||||||||| ||| ||||||||||| | |||  ||||||| ||| || ||||| ||||||||  ||||| ||   | |||||  || | |||||| |    
T  19716508 gcatctaattcaaaattcatagcctttaaccaatgctcagactaacaagcctccttgtaggttttttgctcagtataatttgtaacggacatagaaaaag 19716607  T
Q  364 ccttgtgtgaatgtgataagtgtgtaagtgaatgaaatgatgcaatagggtaaggagtacct 425  Q
     ||| || ||| |||||||||||| || | ||||| ||||||||||||||||| ||||||||    
T  19716608 acttatgagaaggtgataagtgtgcaaattaatgatatgatgcaatagggtaacgagtacct 19716669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 108 - 425
Target Start/End: Complemental strand, 2997634 - 2997317
Alignment:
Q  108 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 207  Q
    |||||||||||||||||||| || || |||| |||  |||||||| |||| || || ||||| ||||| |  || || ||||||||||| ||||| || |    
T  2997634 ccttcaacttgattatatcctttagccaccagtctagctttgtatctttctatactgccatctgccttgtgcttaattttataaacccacttactaccaa 2997535  T
Q  208 taggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactg 307  Q
    ||||||| |||||  |||||   |  ||||| |  || || |||||||||||||| || ||||||||||| |||||||| |||| | || ||||||||||    
T  2997534 taggcttcacattgtgaggaagatcaacaatagaccaagttccattcttagccaatgcttctaattcagattccatagcttttaaccaacattcagactg 2997435  T
Q  308 acatgcttccttataggttttgggctcaatactttgtgtaatagaaagagaaaatgccttgtgtgaatg-tgataagtgtgtaagtgaatgaaatgatgc 406  Q
    ||  ||||| || |||||||| |||||| ||| |||||| | ||| | |||||| | ||| || ||||| |||||| |||| |   |||||| |||||||    
T  2997434 actagcttctttgtaggtttttggctcagtacattgtgtgacagacatagaaaaagacttttg-gaatgatgataaatgtgcataagaatgatatgatgc 2997336  T
Q  407 aatagggtaaggagtacct 425  Q
    |||||||||| ||||||||    
T  2997335 aatagggtaaagagtacct 2997317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 25575143 - 25575198
Alignment:
Q  299 ttcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaa 354  Q
    ||||||||||||||| || |||||||||||||||||| ||||||||||||| ||||    
T  25575143 ttcagactgacatgcctctttataggttttgggctcagtactttgtgtaatggaaa 25575198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 20077481 - 20077426
Alignment:
Q  299 ttcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaa 354  Q
    |||||||||||||||||| || |||||||| |||||| |||||||||| |||||||    
T  20077481 ttcagactgacatgcttctttgtaggttttaggctcagtactttgtgtgatagaaa 20077426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 15194165 - 15194062
Alignment:
Q  108 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 207  Q
    |||||||||||| |||| || ||||| ||||||||  |||| ||| |||| ||  ||||||| | |||||  |||||||| |||||||| || |||||||    
T  15194165 ccttcaacttgagtatagccttttgctaccaatctagctttatatctttctatagtcccatctgacttatgcttgatcttgtaaacccatttgctcccta 15194066  T
Q  208 tagg 211  Q
    ||||    
T  15194065 tagg 15194062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 108 - 346
Target Start/End: Complemental strand, 34824928 - 34824690
Alignment:
Q  108 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 207  Q
    |||||||||||||||||||| || || |||| |||  |||||||| |||| || || ||||| ||||| |  || || ||||||||||| ||||| || |    
T  34824928 ccttcaacttgattatatcctttagccaccagtctagctttgtatctttctatactgccatctgccttgtgcttaattttataaacccacttactaccaa 34824829  T
Q  208 taggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactg 307  Q
    ||||||| |||||  |||||   |  ||||| |  || || ||||||||||| || || ||||||||||| |||||||| |||| | || ||||||||||    
T  34824828 taggcttcacattgtgaggaagatcaacaatagaccaagttccattcttagctaatgcttctaattcagattccatagcttttaaccaacattcagactg 34824729  T
Q  308 acatgcttccttataggttttgggctcaatactttgtgt 346  Q
    ||  ||||| || |||||||| |||||| ||| ||||||    
T  34824728 actagcttctttgtaggtttttggctcagtacattgtgt 34824690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 108 - 425
Target Start/End: Complemental strand, 33460771 - 33460454
Alignment:
Q  108 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 207  Q
    |||||||||||||||||||| || || |||| |||  |||||||| | |  || || |||||  |||| |  || || ||||||||||| ||||| || |    
T  33460771 ccttcaacttgattatatcctttagccaccagtctagctttgtatctctttatactgccatcttccttgtgcttaattttataaacccacttactaccaa 33460672  T
Q  208 taggcttgacattaggaggagtttgcacaattgttcaggtaccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactg 307  Q
    ||||||| |||||  |||||   |  ||||| |  || || ||||||||| | || || ||||||||||| |||||||| |||| | || ||||||||||    
T  33460671 taggcttcacattgtgaggaagatcaacaatagaccaagttccattcttacctaatgcttctaattcagattccatagcttttaaccaacattcagactg 33460572  T
Q  308 acatgcttccttataggttttgggctcaatactttgtgtaatagaaagagaaaatgccttgtgtgaatgtgataagtgtgtaagtgaatgaaatgatgca 407  Q
    ||  ||||| ||||||||||| |||||| ||| |||||| | ||| | |||||| | ||| || ||   |||||| |||| |   |||||| ||||||||    
T  33460571 actagcttctttataggtttttggctcagtacattgtgtgacagacatagaaaaagacttttgggatgatgataaatgtgcataagaatgatatgatgca 33460472  T
Q  408 atagggtaaggagtacct 425  Q
    ||||||||| ||||||||    
T  33460471 atagggtaaagagtacct 33460454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 346
Target Start/End: Original strand, 5374237 - 5374333
Alignment:
Q  249 ccattcttagccaaagcatctaattcagaatccatagcctttaccgaatattcagactgacatgcttccttataggttttgggctcaatactttgtgt 346  Q
    ||||||||||| ||||| ||||||||| ||| ||| ||  ||| | |||  |||||||||||||||| |||||||||||| |||||| ||||||||||    
T  5374237 ccattcttagctaaagcctctaattca-aattcattgcagttaaccaatgctcagactgacatgcttacttataggtttttggctcagtactttgtgt 5374333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 25420574 - 25420621
Alignment:
Q  299 ttcagactgacatgcttccttataggttttgggctcaatactttgtgt 346  Q
    |||||||||||||||||| |||||||||||||| ||| ||||||||||    
T  25420574 ttcagactgacatgcttctttataggttttgggttcagtactttgtgt 25420621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 26134517 - 26134405
Alignment:
Q  108 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 207  Q
    ||||||||||||||||| || || || |||| |||| |  ||||  | || ||||||||||| ||||||| |||||| ||||| ||||| ||||| || |    
T  26134517 ccttcaacttgattatagcctttagccaccagtctggccatgtacctctctatgctcccatctgccttatgtttgattttatacacccatttactaccaa 26134418  T
Q  208 taggcttgacatt 220  Q
    |||| ||||||||    
T  26134417 taggtttgacatt 26134405  T

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Target: scaffold0779 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 354
Target Start/End: Complemental strand, 4774 - 4719
Alignment:
Q  299 ttcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaa 354  Q
    ||||||||||||||| || |||||||||||||||||| ||||||||||||| ||||    
T  4774 ttcagactgacatgcctctttataggttttgggctcagtactttgtgtaatggaaa 4719  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 18499115 - 18499177
Alignment:
Q  299 ttcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaagagaaaa 361  Q
    |||| |||||||||| || |||||||||||||||||| ||||||||||||| |||| ||||||    
T  18499115 ttcaaactgacatgcctctttataggttttgggctcagtactttgtgtaatggaaatagaaaa 18499177  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 26360786 - 26360848
Alignment:
Q  299 ttcagactgacatgcttccttataggttttgggctcaatactttgtgtaatagaaagagaaaa 361  Q
    ||||||||||||||| || |||||||||||||||||| ||||| ||||||| |||| ||||||    
T  26360786 ttcagactgacatgcctctttataggttttgggctcagtacttcgtgtaatggaaatagaaaa 26360848  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 211
Target Start/End: Complemental strand, 18255032 - 18254929
Alignment:
Q  108 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 207  Q
    |||||||||||| |||| |||||||| ||||||||  |||| ||| |||| ||  ||||||| | |||||  |||||||| |||||||| || |||||||    
T  18255032 ccttcaacttgagtatagccctttgccaccaatcttgctttatatctttctatagtcccatctgacttatgcttgatcttgtaaacccatttgctcccta 18254933  T
Q  208 tagg 211  Q
    ||||    
T  18254932 tagg 18254929  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 216
Target Start/End: Complemental strand, 13989061 - 13988947
Alignment:
Q  102 tcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattac 201  Q
    |||| |||||||||||||||||| || || || |||| |||| | |||||  | || ||||||||||| ||||||| |||||| ||||| ||||| ||||    
T  13989061 tcaataccttcaacttgattatagcctttagccaccagtctggccttgtacctctctatgctcccatctgccttatgtttgattttatacacccatttac 13988962  T
Q  202 tccctataggcttga 216  Q
    | || ||||| ||||    
T  13988961 taccaataggtttga 13988947  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 2005640 - 2005593
Alignment:
Q  299 ttcagactgacatgcttccttataggttttgggctcaatactttgtgt 346  Q
    |||||||||||||||||| || ||||||||||| ||| ||||||||||    
T  2005640 ttcagactgacatgcttctttttaggttttgggttcagtactttgtgt 2005593  T

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Target: scaffold0014 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 216
Target Start/End: Original strand, 94856 - 94970
Alignment:
Q  102 tcaagaccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattac 201  Q
    |||| |||||||||||||||||| || || || |||| |||| | |||||  | || ||||||||||| ||||||| |||||| ||||| ||||| ||||    
T  94856 tcaataccttcaacttgattatagcctttagccaccagtctggccttgtacctctctatgctcccatctgccttatgtttgattttatacacccatttac 94955  T
Q  202 tccctataggcttga 216  Q
    | || ||||| ||||    
T  94956 taccaataggtttga 94970  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 216
Target Start/End: Complemental strand, 16257595 - 16257487
Alignment:
Q  108 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 207  Q
    ||||||||||||||||| || || || |||| |||| | |||||  | || ||||||||||| ||||||| |||||| ||||| ||||| ||||| || |    
T  16257595 ccttcaacttgattatagcctttagccaccagtctggccttgtacctctctatgctcccatctgccttatgtttgattttatacacccatttactaccaa 16257496  T
Q  208 taggcttga 216  Q
    |||| ||||    
T  16257495 taggtttga 16257487  T

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Target: scaffold0164 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 26189 - 26292
Alignment:
Q  108 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 207  Q
    |||||||||||| |||| || ||||| ||||||||  |||| ||| |||| ||  ||||||| | |||||  |||||||| |||||||| || |||||||    
T  26189 ccttcaacttgagtatagccttttgctaccaatctagctttatatctttctatagtcccatctgacttatgcttgatcttgtaaacccatttgctcccta 26288  T
Q  208 tagg 211  Q
    ||||    
T  26289 tagg 26292  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 49640116 - 49640219
Alignment:
Q  108 ccttcaacttgattatatccctttgcaaccaatctgactttgtatatttcaatgctcccatcagccttatatttgatcttataaacccaattactcccta 207  Q
    |||||||||||| |||| || ||||| ||||||||  |||| ||| |||| ||  ||||||| | |||||  |||||||| |||||||| || |||||||    
T  49640116 ccttcaacttgagtatagccttttgctaccaatctagctttatatctttctatagtcccatctgacttatgcttgatcttgtaaacccatttgctcccta 49640215  T
Q  208 tagg 211  Q
    ||||    
T  49640216 tagg 49640219  T

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