View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18156_low_18 (Length: 527)

Name: NF18156_low_18
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18156_low_18
NF18156_low_18
[»] chr1 (2 HSPs)
chr1 (13-511)||(26405934-26406431)
chr1 (233-284)||(45022934-45022985)
[»] chr5 (2 HSPs)
chr5 (315-389)||(20172899-20172973)
chr5 (233-282)||(20173042-20173091)
[»] chr8 (2 HSPs)
chr8 (347-383)||(30638566-30638602)
chr8 (231-284)||(30638415-30638468)
[»] chr7 (6 HSPs)
chr7 (252-284)||(10855298-10855330)
chr7 (233-284)||(8185910-8185961)
chr7 (349-411)||(8185747-8185809)
chr7 (349-411)||(14294924-14294986)
chr7 (252-284)||(10853889-10853921)
chr7 (349-389)||(10854022-10854062)
[»] scaffold0475 (1 HSPs)
scaffold0475 (233-284)||(1522-1573)
[»] scaffold0039 (1 HSPs)
scaffold0039 (349-411)||(2390-2452)
[»] scaffold0035 (1 HSPs)
scaffold0035 (242-282)||(57124-57164)
[»] chr4 (1 HSPs)
chr4 (242-282)||(14706207-14706247)
[»] chr3 (4 HSPs)
chr3 (242-282)||(16320383-16320423)
chr3 (242-282)||(18512459-18512499)
chr3 (242-282)||(22017169-22017209)
chr3 (242-282)||(22021657-22021697)


Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 13 - 511
Target Start/End: Complemental strand, 26406431 - 26405934
Alignment:
Q  13 catcaatttgatcggtcttggcttggagtcaggtttattcaattaatggctgcatgcatggtcagtataaataataatttttgtacctatcaaataagac 112  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26406431 catctatttgatcggtcttggcttggagtcaggtttattcaattaatggctgcatgcatggtcagtataaataataatttttgtacctgtcaaataagac 26406332  T
Q  113 ctaaatttttctaatgtgaatactatggctaacaattctttttctgtggtagtgtaattaatttgtgtctcatttaagactttgctagcttagtgaattt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||     
T  26406331 ctaaatttttctaatgtgaatactatggctaacaattctttttctgtggtagtgtaattaatttgtatctcatttaagactttgctagcttagtgaattc 26406232  T
Q  213 catgannnnnnnnncttccttttctttgtcctagtactgcaccgacaacataatcactagcatcacacattatcggtgcaattactagttgttttttaag 312  Q
    |||||          | ||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26406231 catgattttttttt-tcccttttccttgtcctagtactgcatcgacagcataatcactagcatcacacattatcggtgcaattactagttgttttttaag 26406133  T
Q  313 attttcaaaggcttctaaacattgttcataaaaatcaaaagacttatctttgctgagtaaattactcaatggctttgtggtttttgagaaatccttgatg 412  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26406132 attttcaaatgcttctaaacattcttcataaaaatcaaaagacttatctttgctgagtaaattactcaatggctttgtggtttttgagaaatccttgatg 26406033  T
Q  413 catctctggactctagcaagagcattacatagtccaaactccaattgacattcttatatatgcaaagataccaaaatggcaagtgaatgatgtcttttc 511  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26406032 catctctggactgtagcaagagcattacatagtccaaactccaaatgacattcttatatatgcaaagataccaaaatggcaagtgaatgatgtcttttc 26405934  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 45022934 - 45022985
Alignment:
Q  233 tttctttgtcctagtactgcaccgacaacataatcactagcatcacacatta 284  Q
    |||| ||| |||||||| ||||| ||||||||||||||||||||||||||||    
T  45022934 tttcgttgacctagtacggcaccaacaacataatcactagcatcacacatta 45022985  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 389
Target Start/End: Complemental strand, 20172973 - 20172899
Alignment:
Q  315 tttcaaaggcttctaaacattgttcataaaaatcaaaagacttatctttgctgagtaaattactcaatggctttg 389  Q
    ||||||| || | |||||||| || || |||||| ||||||||||||||| |||| ||||| |||||||||||||    
T  20172973 tttcaaaagcatttaaacattcttgatcaaaatcgaaagacttatctttgttgagcaaattgctcaatggctttg 20172899  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 20173091 - 20173042
Alignment:
Q  233 tttctttgtcctagtactgcaccgacaacataatcactagcatcacacat 282  Q
    |||||||| ||||| || ||||| || |||||||||||||||||||||||    
T  20173091 tttctttggcctagcacagcacccaccacataatcactagcatcacacat 20173042  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 383
Target Start/End: Original strand, 30638566 - 30638602
Alignment:
Q  347 tcaaaagacttatctttgctgagtaaattactcaatg 383  Q
    |||||||||||||||||| ||||||||||||||||||    
T  30638566 tcaaaagacttatctttgttgagtaaattactcaatg 30638602  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 30638415 - 30638468
Alignment:
Q  231 cttttctttgtcctagtactgcaccgacaacataatcactagcatcacacatta 284  Q
    ||||| |||||||||||||| || |||||||||||||||||  || ||||||||    
T  30638415 cttttatttgtcctagtacttcatcgacaacataatcactaatatgacacatta 30638468  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 284
Target Start/End: Complemental strand, 10855330 - 10855298
Alignment:
Q  252 caccgacaacataatcactagcatcacacatta 284  Q
    |||||||||||||||||||||||||||||||||    
T  10855330 caccgacaacataatcactagcatcacacatta 10855298  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 8185961 - 8185910
Alignment:
Q  233 tttctttgtcctagtactgcaccgacaacataatcactagcatcacacatta 284  Q
    |||| ||| |||||||| ||||| ||| ||||||||||||||||||||||||    
T  8185961 tttcgttgacctagtacggcaccaacagcataatcactagcatcacacatta 8185910  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 411
Target Start/End: Complemental strand, 8185809 - 8185747
Alignment:
Q  349 aaaagacttatctttgctgagtaaattactcaatggctttgtggtttttgagaaatccttgat 411  Q
    |||||||||||||||| |||| ||||| |||||||||||||   | ||||||||||| |||||    
T  8185809 aaaagacttatctttgttgagcaaattgctcaatggctttgctatctttgagaaatctttgat 8185747  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 411
Target Start/End: Original strand, 14294924 - 14294986
Alignment:
Q  349 aaaagacttatctttgctgagtaaattactcaatggctttgtggtttttgagaaatccttgat 411  Q
    |||||||||||||||| |||| ||||| |||||||||||||   | ||||||||||| |||||    
T  14294924 aaaagacttatctttgttgagcaaattgctcaatggctttgctatctttgagaaatctttgat 14294986  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 284
Target Start/End: Original strand, 10853889 - 10853921
Alignment:
Q  252 caccgacaacataatcactagcatcacacatta 284  Q
    |||| ||||||||||||||||||||||||||||    
T  10853889 caccaacaacataatcactagcatcacacatta 10853921  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 10854022 - 10854062
Alignment:
Q  349 aaaagacttatctttgctgagtaaattactcaatggctttg 389  Q
    |||||||||||||||| |||| ||||| |||||||||||||    
T  10854022 aaaagacttatctttgttgagcaaatttctcaatggctttg 10854062  T

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Target: scaffold0475 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 1573 - 1522
Alignment:
Q  233 tttctttgtcctagtactgcaccgacaacataatcactagcatcacacatta 284  Q
    |||| ||| |||||||| ||||| ||| ||||||||||||||||||||||||    
T  1573 tttcgttgacctagtacggcaccaacagcataatcactagcatcacacatta 1522  T

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Target: scaffold0039 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 411
Target Start/End: Complemental strand, 2452 - 2390
Alignment:
Q  349 aaaagacttatctttgctgagtaaattactcaatggctttgtggtttttgagaaatccttgat 411  Q
    |||||||||||||||| |||| ||||| |||||||||||||   | ||||||||||| |||||    
T  2452 aaaagacttatctttgttgagcaaattgctcaatggctttgctatctttgagaaatctttgat 2390  T

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Target: scaffold0035 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 57164 - 57124
Alignment:
Q  242 cctagtactgcaccgacaacataatcactagcatcacacat 282  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  57164 cctaggactgcaccaacaacataatcacttgcatcacacat 57124  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 14706247 - 14706207
Alignment:
Q  242 cctagtactgcaccgacaacataatcactagcatcacacat 282  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  14706247 cctaggactgcaccaacaacataatcacttgcatcacacat 14706207  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 16320383 - 16320423
Alignment:
Q  242 cctagtactgcaccgacaacataatcactagcatcacacat 282  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  16320383 cctaggactgcaccaacaacataatcacttgcatcacacat 16320423  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 18512459 - 18512499
Alignment:
Q  242 cctagtactgcaccgacaacataatcactagcatcacacat 282  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  18512459 cctaggactgcaccaacaacataatcacttgcatcacacat 18512499  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 22017209 - 22017169
Alignment:
Q  242 cctagtactgcaccgacaacataatcactagcatcacacat 282  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  22017209 cctaggactgcaccaacaacataatcacttgcatcacacat 22017169  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 22021697 - 22021657
Alignment:
Q  242 cctagtactgcaccgacaacataatcactagcatcacacat 282  Q
    ||||| |||||||| |||||||||||||| |||||||||||    
T  22021697 cctaggactgcaccaacaacataatcacttgcatcacacat 22021657  T

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