View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18156_low_2 (Length: 851)
Name: NF18156_low_2
Description: NF18156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18156_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 668; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 19 - 835
Target Start/End: Original strand, 18668066 - 18668879
Alignment:
| Q |
19 |
aaatttatgttataataataataatttaagtattggtgtgtaatttatgnnnnnnnnncaaaaggcaaaataaattatattactaccacactgcactttt |
118 |
Q |
| |
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|||| ||||| |||||||||| ||||||||| ||||||||||||||||| | | |||||||| ||||||||||||||||||||| |||||| |
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| T |
18668066 |
aaatctatgtcataataataagaatttaagtgttggtgtgtaatttatgtttttctttaagacggcaaaatgaattatattactaccacactgtactttt |
18668165 |
T |
|
| Q |
119 |
tcaagcacaagatgtaccctagagaagagcaaaagtcaacaaagatacaatattaacagtaaacatgaaacagcacatcaaaggactaagccaccaattg |
218 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
18668166 |
tcaagcacaagatgtactctagagaagagcaaaagtcaacaaagatacaatattaacagaaaacaagaaacagcacatcaaaggactaagccaccaattg |
18668265 |
T |
|
| Q |
219 |
tgatagtcaaaagcaatgttgctgaattttgccttcgaccaccagaaggagatgagcttaacacgatctaaaagttggaatgtcgggcaagccttggtgg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | | |
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| T |
18668266 |
tgatagtcaaaagcaatgttgctgaattttgccttcgaccaccagaaggagatgagcttaacacgatctaaaagttggaatgtcggacaagccttgttag |
18668365 |
T |
|
| Q |
319 |
agaaaatcttgttatttcgttcttttcaaataatccaaatgcaagcacttcaaatcataatcataaaagagcgtttcgattttgaagtaccggttaaata |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18668366 |
agaaaatcttgttatttcgttcttttcaaataatccaaatgcaagcacttcaaatcataatcataaaagagcgtttcgattttgaagtaccggctaaata |
18668465 |
T |
|
| Q |
419 |
ggcaaactaatgtaaatgatcggaaacaacatacggggaggccgaaacaaagcttagccaccgaagcacgtaataccacaacgatccaaacacaatacaa |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18668466 |
ggcaaactaatgtaaatgatcggaaacaacatacggggaggccgaaacaaagcttagccaccgaagcacgtaataccacaacgatccaaacacaatacaa |
18668565 |
T |
|
| Q |
519 |
ttcagaaaatgggtgagccgcagattctaaatgactgcacccactcacacaaagctgagcatcttgtggaataatacgatgtttgtaaattgtcctcagc |
618 |
Q |
| |
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|||||||||||||||||||||||||||| | |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18668566 |
ttcagaaaatgggtgagccgcagattcttagtgaccgcacccatccacacaaagctgaacatcttgtggaataatacgatgtttgtaaattgtcct---t |
18668662 |
T |
|
| Q |
619 |
aggcaatctattccacaataatagccaaacaaacaaagacaccttcaaagggatatcttgattccaaaagtaatccatgaccacaaccacctgatgaggg |
718 |
Q |
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| T |
18668663 |
aggcaatctattccgcaataatagccaaacaaacaaagacaccttcaaagggatatcttgattccaaaagtaatccaggaccacaaccacctgatgaggg |
18668762 |
T |
|
| Q |
719 |
acctcgctggtaagaagacgatacgcaccgcacaagaatccaaatccaacaatcatgtatatcaatctgtgtaatttatgttatgagtgcaacgttttcc |
818 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18668763 |
accttgctggtaagaagacgatacgcaccgcacaagaatccaaatccaacaatgatgtatatcaatctgtgtaatttatgttatgagtgcaacgttttcc |
18668862 |
T |
|
| Q |
819 |
actccaagtatttaaaa |
835 |
Q |
| |
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||||||||||||||||| |
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| T |
18668863 |
actccaagtatttaaaa |
18668879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 6e-64; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 274 - 572
Target Start/End: Original strand, 36389882 - 36390163
Alignment:
| Q |
274 |
gcttaacacgatctaaaagttggaatgtcgggcaagccttggtggagaaaatcttgttatttcgttcttttcaaataatccaaatgcaagcacttcaaat |
373 |
Q |
| |
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|||||||||| ||||||| |||||| ||||||||||||||| | ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36389882 |
gcttaacacggtctaaaatttggaaggtcgggcaagccttgttagagaaaatcatgttatttcgatcttttcaaataatccaaatgcaagcacttcaaat |
36389981 |
T |
|
| Q |
374 |
cataatcataaaagagcgtttcgattttgaagtaccggttaaataggcaaactaatgtaaatgatcggaaacaacatacggggaggccgaaacaaagctt |
473 |
Q |
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| T |
36389982 |
cataattacaaaagagcatttcaattttgaagtaccgactaaataggaaaactgaagtaaatgatcgaaaacaacaaatggggaggccgaagca------ |
36390075 |
T |
|
| Q |
474 |
agccaccgaagcacgtaataccacaacgatccaaacacaatacaattcagaaaatgggtgagccgcagattctaaatgactgcacccactcacacaaag |
572 |
Q |
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| T |
36390076 |
--------aagcacataata--acaacgatccaaacacaggacaattcagaaaa-aggtgatctgcagattctaaatgaccgcacccactcacacaaag |
36390163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 84 - 191
Target Start/End: Original strand, 36389129 - 36389236
Alignment:
| Q |
84 |
caaaataaattatattactaccacactgcactttttcaagcacaagatgtaccctagagaagagcaaaagtcaacaaagatacaatattaacagtaaaca |
183 |
Q |
| |
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|||||| |||||||||||||||||| | | || | | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36389129 |
caaaatgaattatattactaccacaataccctctcttaagcacaagacataccctagagaagagcaaaagtcaacaaagatacaatattaacagtaaaca |
36389228 |
T |
|
| Q |
184 |
tgaaacag |
191 |
Q |
| |
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||||||| |
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| T |
36389229 |
agaaacag |
36389236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 190 - 282
Target Start/End: Original strand, 36389275 - 36389364
Alignment:
| Q |
190 |
agcacatcaaaggactaagccaccaattgtgatagtcaaaagcaatgttgctgaattttgccttcgaccaccagaaggagatgagcttaacac |
282 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| || ||||| ||| ||||||||||||||| |
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| T |
36389275 |
agcacatcaaagggctaagccaccaattgtgatagtcaaaagtaatgttgctgaattttgcttttaaccactaga---agatgagcttaacac |
36389364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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